sRNAtoolbox: an integrated collection of small RNA research tools. - Antonio Rueda; Guillermo Barturen; Ricardo Lebrón; Cristina Gómez-Martín; Ángel M. Alganza; José L. Oliver; Michael Hackenberg (Nucleic Acids Res., 2015)

NGSmethDB 2017: enhanced methylomes and differential methylation. - Ricardo Lebrón; Cristina Gómez-Martín; Pedro Carpena; Pedro Bernaola-Galván; Guillermo Barturen; Michael Hackenberg; José L. Oliver (Nucleic Acids Res., 2017)

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. - Ernesto Aparicio-Puerta; Ricardo Lebrón; Antonio Rueda; Cristina Gómez-Martín; Stavros Giannoukakos; David Jáspez; José María Medina; Andreja Zubkovic; Igor Jurak; Bastian Fromm; Juan Antonio Marchal; José L. Oliver; et al. (Nucleic Acids Res., 2019)

mirnaQC: a webserver for comparative quality control of miRNA-seq data. - Ernesto Aparicio-Puerta; Cristina Gómez-Martín; Stavros Giannoukakos; José María Medina; Juan Antonio Marchal; Michael Hackenberg (Nucleic Acids Res., 2020)

sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms. - Ernesto Aparicio-Puerta; Cristina Gómez-Martín; Stavros Giannoukakos; José María Medina; Chantal Scheepbouwer; Adrián García-Moreno; Pedro Carmona-Saez; Bastian Fromm; Michiel Pegtel; Andreas Keller; Juan Antonio Marchal; Michael Hackenberg (Nucleic Acids Res., 2022)

NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods. - Chantal Scheepbouwer; Michael Hackenberg; Monique A J. van Eijndhoven; Alan Gerber; Michiel Pegtel; Cristina Gómez-Martín (Nucleic Acids Res., 2023)