Analysis of segmental duplications via duplication distance. - Crystal L. Kahn; Benjamin J. Raphael (ECCB, 2008)

A Parsimony Approach to Analysis of Human Segmental Duplications. - Crystal L. Kahn; Benjamin J. Raphael (Pacific Symposium on Biocomputing, 2009)

Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes. - Crystal L. Kahn; Shay Mozes; Benjamin J. Raphael (Algorithms Mol. Biol., 2010)

Parsimony and likelihood reconstruction of human segmental duplications. - Crystal L. Kahn; Borislav H. Hristov; Benjamin J. Raphael (Bioinform., 2010)

Algorithms for Analyzing Human Genome Rearrangements. - Crystal L. Kahn (2011)

Reconstructing genome mixtures from partial adjacencies. - Ahmad Mahmoody; Crystal L. Kahn; Benjamin J. Raphael (BMC Bioinform., 2012)