Improving the Prediction of Disease-associated Genes by Integrating Annotated Gene Sets. - Chao Deng; Cui-Xiang Lin; Hong-Dong Li (BIBM, 2021)

REBET: a method to determine the number of cell clusters based on batch effect removal. - Zhao-Yu Fang; Cui-Xiang Lin; Yun-Pei Xu; Hong-Dong Li; Qing-Song Xu (Briefings Bioinform., 2021)

An Alzheimer's disease gene prediction method based on ensemble of genome-wide association study summary statistics. - Jia-Hao Song; Cui-Xiang Lin; Hong-Dong Li (BIBM, 2022)

An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease. - Cui-Xiang Lin; Hong-Dong Li; Chao Deng; Weisheng Liu; Shannon Erhardt; Fang-Xiang Wu; Xing-Ming Zhao; Yuanfang Guan; Jun Wang 153; Daifeng Wang; Bin Hu 001; Jianxin Wang 001 (Briefings Bioinform., 2022)

AlzCode: a platform for multiview analysis of genes related to Alzheimer's disease. - Cui-Xiang Lin; Hong-Dong Li; Chao Deng; Shannon Erhardt; Jun Wang 153; Xiaoqing Peng; Jianxin Wang 001 (Bioinform., 2022)

TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data. - Cui-Xiang Lin; Hong-Dong Li; Chao Deng; Yuanfang Guan; Jianxin Wang 001 (Nucleic Acids Res., 2022)

GTFtools: a software package for analyzing various features of gene models. - Hong-Dong Li; Cui-Xiang Lin; Jiantao Zheng (Bioinform., 2022)

CellBRF: a feature selection method for single-cell clustering using cell balance and random forest. - Yunpei Xu; Hong-Dong Li; Cui-Xiang Lin; Ruiqing Zheng; Yaohang Li; Jinhui Xu 001; Jianxin Wang 001 (Bioinform., 2023)

A Gene Set-Integrated Approach for Predicting Disease-Associated Genes. - Hong-Dong Li; Chao Deng; Xiao-Qi Zhang; Cui-Xiang Lin (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Computational approaches for detecting disease-associated alternative splicing events. - Jiashu Liu; Cui-Xiang Lin; Xiaoqi Zhang; Zongxuan Li; Wenkui Huang; Jin Liu; Yuanfang Guan; Hong-Dong Li (Briefings Bioinform., 2023)

LIMO-GCN: a linear model-integrated graph convolutional network for predicting Alzheimer disease genes. - Cui-Xiang Lin; Hong-Dong Li; Jianxin Wang 001 (Briefings Bioinform., 2024)