Efficient alignment of RNA secondary structures using sparse dynamic programming. - Cuncong Zhong; Shaojie Zhang 001 (BMC Bioinform., 2013)

ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search. - Ping Ge; Cuncong Zhong; Shaojie Zhang 001 (BMC Bioinform., 2014)

Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements. - Yuan Li; Cuncong Zhong; Shaojie Zhang 001 (Int. J. Bioinform. Res. Appl., 2014)

Discovering non-coding RNA elements in Drosophila 3' untranslated regions. - Cuncong Zhong; Justen Andrews; Shaojie Zhang 001 (Int. J. Bioinform. Res. Appl., 2014)

Simultaneous Folding of Alternative RNA Structures with Mutual Constraints: An Application to Next-Generation Sequencing-based RNA Structure Probing. - Cuncong Zhong; Shaojie Zhang 001 (J. Comput. Biol., 2014)

SFA-SPA: a suffix array based short peptide assembler for metagenomic data. - Youngik Yang; Cuncong Zhong; Shibu Yooseph (Bioinform., 2015)

GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly. - Cuncong Zhong; Youngik Yang; Shibu Yooseph (BMC Bioinform., 2016)

Metagenome and Metatranscriptome Analyses Using Protein Family Profiles. - Cuncong Zhong; Anna Edlund; Youngik Yang; Jeffrey S. McLean; Shibu Yooseph (PLoS Comput. Biol., 2016)

GRASP2: Fast and memory-efficient gene-centric assembly and homolog search. - Cuncong Zhong; Youngik Yang; Shibu Yooseph (ICCABS, 2017)

GRASP2: fast and memory-efficient gene-centric assembly and homolog search for metagenomic sequencing data. - Cuncong Zhong; Youngik Yang; Shibu Yooseph (BMC Bioinform., 2019)

Classification of Noncoding RNA Elements Using Deep Convolutional Neural Networks. - Brian McClannahan; Krushi Patel; Usman Sajid; Cuncong Zhong; Guanghui Wang 001 (SMC, 2020)

A Fine-Grained Visual Attention Approach for Fingerspelling Recognition in the Wild. - Kamala Gajurel; Cuncong Zhong; Guanghui Wang 001 (SMC, 2021)

Classification of Long Noncoding RNA Elements Using Deep Convolutional Neural Networks and Siamese Networks. - Brian McClannahan; Cuncong Zhong; Guanghui Wang 001 (CoRR, 2021)

Colonoscopy Polyp Detection and Classification: Dataset Creation and Comparative Evaluations. - Kaidong Li; Mohammad I. Fathan; Krushi Patel; Tianxiao Zhang; Cuncong Zhong; Ajay Bansal; Amit Rastogi; Jean S. Wang; Guanghui Wang 001 (CoRR, 2021)

Robust Structured Declarative Classifiers for 3D Point Clouds: Defending Adversarial Attacks with Implicit Gradients. - Kaidong Li; Ziming Zhang; Cuncong Zhong; Guanghui Wang 001 (CVPR, 2022)

Dilated Continuous Random Field for Semantic Segmentation. - Xi Mo; Xiangyu Chen 008; Cuncong Zhong; Rui Li; Kaidong Li; Usman Sajid (ICRA, 2022)

Dilated Continuous Random Field for Semantic Segmentation. - Xi Mo; Xiangyu Chen; Cuncong Zhong; Rui Li; Kaidong Li; Usman Sajid (CoRR, 2022)

Explicitly Increasing Input Information Density for Vision Transformers on Small Datasets. - Xiangyu Chen 008; Ying Qin; Wenju Xu; Andrés M. Bur; Cuncong Zhong; Guanghui Wang 001 (CoRR, 2022)

RPfam: A refiner towards curated-like multiple sequence alignments of the Pfam protein families. - Qingting Wei; Hong Zou; Cuncong Zhong; Jianfeng Xu (J. Bioinform. Comput. Biol., 2022)

Accumulated Trivial Attention Matters in Vision Transformers on Small Datasets. - Xiangyu Chen 008; Qinghao Hu; Kaidong Li; Cuncong Zhong; Guanghui Wang 001 (WACV, 2023)

A New Dataset and Comparative Study for Aphid Cluster Detection. - Tianxiao Zhang; Kaidong Li; Xiangyu Chen 008; Cuncong Zhong; Bo Luo; Ivan Grijalva Teran; Brian McCornack; Daniel Flippo; Ajay Sharda; Guanghui Wang 001 (CoRR, 2023)

Aphid Cluster Recognition and Detection in the Wild Using Deep Learning Models. - Tianxiao Zhang; Kaidong Li; Xiangyu Chen 008; Cuncong Zhong; Bo Luo; Ivan Grijalva Teran; Brian McCornack; Daniel Flippo; Ajay Sharda; Guanghui Wang 001 (CoRR, 2023)

Meta-Learning on Augmented Gene Expression Profiles for Enhanced Lung Cancer Detection. - Arya Hadizadeh Moghaddam; Mohsen Nayebi Kerdabadi; Cuncong Zhong; Zijun Yao 001 (CoRR, 2024)

Robust 3D point clouds classification based on declarative defenders. - Kaidong Li; Tianxiao Zhang; Cuncong Zhong; Ziming Zhang; Guanghui Wang 001 (Neural Comput. Appl., 2025)