Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2. - Zeynep Kurkcuoglu; Panagiotis I. Koukos; Nevia Citro; Mikael E. Trellet; João P. G. L. M. Rodrigues; Irina S. Moreira; Jorge Roel-Touris; Adrien S. J. Melquiond; Cunliang Geng; Jörg Schaarschmidt; Li C. Xue; Anna Vangone; et al. (J. Comput. Aided Mol. Des., 2018)

Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server. - Anna Vangone; Jörg Schaarschmidt; Panagiotis I. Koukos; Cunliang Geng; Nevia Citro; Mikael E. Trellet; Li C. Xue; Alexandre M. J. J. Bonvin (Bioinform., 2019)

iScore: a novel graph kernel-based function for scoring protein-protein docking models. - Cunliang Geng; Yong Jung; Nicolas Renaud; Vasant G. Honavar; Alexandre M. J. J. Bonvin; Li C. Xue (Bioinform., 2020)

Deep-learning enhancement of large scale numerical simulations. - Caspar van Leeuwen; Damian Podareanu; Valeriu Codreanu; Maxwell X. Cai; Axel Berg; Simon Portegies Zwart; Robin Stoffer; Menno Veerman; Chiel van Heerwaarden; Sydney Otten; Sascha Caron; Cunliang Geng; et al. (CoRR, 2020)

matchms - processing and similarity evaluation of mass spectrometry data. - Florian Huber; Stefan Verhoeven; Christiaan Meijer; Hanno Spreeuw; Efraín Castilla; Cunliang Geng; Justin J. J. van der Hooft; Simon Rogers; Adam Belloum; Faruk Diblen; Jurriaan H. Spaaks (J. Open Source Softw., 2020)

The pdb2sql Python Package: Parsing, Manipulation and Analysis of PDB Files Using SQL Queries. - Nicolas Renaud; Cunliang Geng (J. Open Source Softw., 2020)

iScore: An MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines. - Nicolas Renaud; Yong Jung; Vasant G. Honavar; Cunliang Geng; Alexandre M. J. J. Bonvin; Li C. Xue (SoftwareX, 2020)

Reusable virtual coach for smoking cessation and physical activity coaching. - Walter Baccinelli; Sven van der Burg; Robin A. Richardson; Djura Smits; Cunliang Geng; Lars Ridder; Bouke L. Scheltinga; Nele Albers; Willem-Paul Brinkman; Eline Meijer; Jasper Reenalda (IVA, 2022)

Beyond Docker: Enhancing vantage6 with Kubernetes for Federated Learning. - Héctor Cadavid; Cunliang Geng (MIE, 2024)

GameBus on FHIR. - Cunliang Geng; Alireza Khanshan; Pieter Van Gorp (MIE, 2024)