Using Coded Semantic Relationships to Retrieve and Structure Clinical Reference Information. - Cynthia Brandt; Lori A. Fernandes; Seth Powsner; Keith J. Ruskin; Perry L. Miller (AMIA, 1997)

A prototype Web site for immunization knowledge maintenance. - Perry L. Miller; Sandra J. Frawley; Cynthia Brandt; Frederick G. Sayward (AMIA, 1997)

SEURAT: Scanned Entry of Structured Data for a Pediatric Health Maintenance Record System. - Richard N. Shiffman; Cynthia Brandt; Maryrose Hoffman; Wanda Wiig; Lori A. Fernandes (AMIA, 1997)

ACT/DB: A Clinical Trials Database Being Refined on a Pilot Basis at Two Medical Centers. - Cynthia Brandt; Prakash M. Nadkarni; Lee Schacter; Daniel Zelterman; Yuli Li; John M. Fisk; Edward K. Shultz; Perry L. Miller (AMIA, 1998)

Application of Technology: Managing Attribute-Value Clinical Trials Data Using the ACT/DB Client-Server Database System. - Prakash M. Nadkarni; Cynthia Brandt; Sandra J. Frawley; Frederick G. Sayward; Robin Einbinder; Daniel Zelterman; Lee Schacter; Perry L. Miller (J. Am. Medical Informatics Assoc., 1998)

Model Formulation: A Design Model for Computer-based Guideline Implementation Based on Information Management Services. - Richard N. Shiffman; Cynthia Brandt; Yischon Liaw; Geoffrey J. Corb (J. Am. Medical Informatics Assoc., 1999)

Review: Computer-based Guideline Implementation Systems: A Systematic Review of Functionality and Effectiveness. - Richard N. Shiffman; Yischon Liaw; Cynthia Brandt; Geoffrey J. Corb (J. Am. Medical Informatics Assoc., 1999)

Promoting Workflow Integration with Information Management Services and GEM-encoded Guidelines. - Abha Agrawal; Cynthia Brandt; Richard N. Shiffman (AMIA, 2000)

Application of Information Technology: WebEAV: Automatic Metadata-driven Generation of Web Interfaces to Entity-Attribute-Value Databases. - Prakash M. Nadkarni; Cynthia Brandt; Luis N. Marenco (J. Am. Medical Informatics Assoc., 2000)

Generation of pedigree diagrams for web display using scalable vector graphics from a clinical trials database. - Sanjay K. Fernando; Cynthia Brandt; Prakash M. Nadkarni (AMIA, 2001)

Web-based UMLS concept retrieval by automatic text scanning: a comparison of two methods. - Cynthia Brandt; Prakash M. Nadkarni (Comput. Methods Programs Biomed., 2001)

Research Paper: UMLS Concept Indexing for Production Databases: A Feasibility Study. - Prakash M. Nadkarni; Roland Chen; Cynthia Brandt (J. Am. Medical Informatics Assoc., 2001)

Metadata-driven creation of data marts from an EAV-modeled clinical research database. - Cynthia Brandt; Richard Morse; Keri Matthews; Kexin Sun; Aniruddha M. Deshpande; Rohit Gadagkar; Dorothy B. Cohen; Perry L. Miller; Prakash M. Nadkarni (Int. J. Medical Informatics, 2002)

Application of Information Technology: Metadata-driven Ad Hoc Query of Patient Data: Meeting the Needs of Clinical Studies. - Aniruddha M. Deshpande; Cynthia Brandt; Prakash M. Nadkarni (J. Am. Medical Informatics Assoc., 2002)

TrialDB: A Web-based Clinical Study Data Management System AMIA 2003 Open Source Expo. - Cynthia Brandt; Aniruddha M. Deshpande; Charles Lu 003; Gowri Ananth; Kexin Sun; Rohit Gadagkar; Richard Morse; Cesar Rodriguez; Perry L. Miller; Prakash M. Nadkarni (AMIA, 2003)

The Integration of Similar Clinical Research Data Collection Instruments. - Dorothy B. Cohen; Sandra J. Frawley; Mark A. Shifman; Perry L. Miller; Cynthia Brandt (AMIA, 2003)

Temporal query of attribute-value patient data: utilizing the constraints of clinical studies. - Aniruddha M. Deshpande; Cynthia Brandt; Prakash M. Nadkarni (Int. J. Medical Informatics, 2003)

Application of Information Technology: Managing Complex Change in Clinical Study Metadata. - Cynthia Brandt; Rohit Gadagkar; Cesar Rodriguez; Prakash M. Nadkarni (J. Am. Medical Informatics Assoc., 2004)

Case Report: Exploring the Portability of Informatics Capabilities from a Clinical Application to a Bioscience Application. - Mark A. Shifman; Ranjana Srivastava; Cynthia Brandt; Tong-Ruei Li; Kevin P. White; Perry L. Miller (J. Am. Medical Informatics Assoc., 2004)

Informatics Tools to Improve Clinical Research. - Stephanie Argraves; Cynthia Brandt; Roy Money; Prakash M. Nadkarni (AMIA, 2005)

Validation of a System for Quality Improvement: Preliminary Data. - Andrea L. Benin; Harlan M. Krumholz; Eugene Shapiro; Cynthia Brandt (AMIA, 2005)

Automating Identification of Adverse Events Related to Abnormal Lab Results Using Standard Vocabularies. - Cynthia Brandt; Charles Lu 003; Prakash M. Nadkarni (AMIA, 2005)

Designing a Tracking System Based on Cognitive Theory of Error. - Hyung M. Paek; Cynthia Brandt (AMIA, 2005)

Metadata Driven Generation of Reports for Clinical Studies. - Kexin Sun; Prakash M. Nadkarni; Cynthia Brandt (AMIA, 2005)

The GuideLine Implementability Appraisal (GLIA): development of an instrument to identify obstacles to guideline implementation. - Richard N. Shiffman; Jane Dixon; Cynthia Brandt; Abdelwaheb Essaihi; Allen Hsiao; George Michel; Ryan T. O'Connell (BMC Medical Informatics Decis. Mak., 2005)

Qualitative Study of Patients' Perceptions of Safety and Risk Related to Electronic Health Records in a Hospital. - Hyung M. Paek; Janice Swiatek-Kelley; Ryan T. O'Connell; Cynthia Brandt (AMIA, 2006)

Pivoting approaches for bulk extraction of Entity-Attribute-Value data. - Valentin Dinu; Prakash M. Nadkarni; Cynthia Brandt (Comput. Methods Programs Biomed., 2006)

Brief review: Use of statistical analysis in the biomedical informatics literature. - Matthew Scotch; Mona Duggal; Cynthia Brandt; Zhenqui Lin; Richard N. Shiffman (J. Am. Medical Informatics Assoc., 2010)

The Yale cTAKES extensions for document classification: architecture and application. - Vijay Garla; Vincent Lo Re III; Zachariah Dorey-Stein; Farah Kidwai; Matthew Scotch; Julie A. Womack; Amy Justice; Cynthia Brandt (J. Am. Medical Informatics Assoc., 2011)

Analysis of VA Telephone Call Notes using Topic Modeling. - Samah J. Fodeh; Sharmila Chatterjee; Cynthia Brandt (AMIA, 2012)

Towards a Clinically Efficient Model for Clinical Decision Support Linked to the VA EMR: A Pilot System for Neuropathic Pain. - Michael Phipps; Hajime Tokuno; Nallakkandi Rajeevan; Forrest W. Levin; Sandra J. Frawley; Cynthia Brandt; Perry L. Miller (AMIA, 2012)

Developing a Terminology for PTSD Psychotherapeutic Modalities for use with Clinical Documents. - Jessica Ross; Maryan Zirkle; Cynthia Brandt; Jennifer H. Garvin; Stephen Luther; David Hickam (AMIA, 2012)

Enhancing Clustering by Exploiting Complementary Data Modalities in the Medical Domain. - Samah Jamal Fodeh; Ali Haddad; Cynthia Brandt; Martin H. Schultz; Michael Krauthammer (AIAI (1), 2012)

Semantic similarity in the biomedical domain: an evaluation across knowledge sources. - Vijay Garla; Cynthia Brandt (BMC Bioinform., 2012)

Ontology-guided feature engineering for clinical text classification. - Vijay Garla; Cynthia Brandt (J. Biomed. Informatics, 2012)

MedCat: A Framework for High Level Conceptualization of Medical Notes. - Samah Jamal Fodeh; Maryan Zirkle; Dezon Finch; Ruth M. Reeves; Joseph Erdos; Cynthia Brandt (ICDM Workshops, 2013)

Improving Patients' Electronic Health Record Comprehension with NoteAid. - Balaji Polepalli Ramesh; Thomas K. Houston; Cynthia Brandt; Hua Fang 001; Hong Yu 001 (MedInfo, 2013)

Knowledge-based biomedical word sense disambiguation: an evaluation and application to clinical document classification. - Vijay Garla; Cynthia Brandt (J. Am. Medical Informatics Assoc., 2013)

Complementary ensemble clustering of biomedical data. - Samah Jamal Fodeh; Cynthia Brandt; Thaibinh Luong; Ali Haddad; Martin H. Schultz; Terrence Murphy; Michael Krauthammer (J. Biomed. Informatics, 2013)

Semi-supervised clinical text classification with Laplacian SVMs: An application to cancer case management. - Vijay Garla; Caroline Taylor; Cynthia Brandt (J. Biomed. Informatics, 2013)

Automating Identification of OEF/OIF Veterans Diagnosed with ALS. - Jennifer M. Aucoin; Shon G. Michael; Amy Justice; Perry L. Miller; Cynthia Brandt; Huned Patwa (AMIA, 2015)

Using the Adverse Event Reporting System: Can Analysis be Streamlined by Text Processing? - Andrea L. Benin; Samah J. Fodeh; Michele Koss; Kyle Lee; Perry L. Miller; Cynthia Brandt (AMIA, 2015)

Feature Selection Based LapSVM to Classify Medical Event Reports and Enhance Patient Safety. - Samah J. Fodeh; Cynthia Brandt; Perry L. Miller; Michele Koss; Andrea L. Benin (AMIA, 2015)

Improving Evidence-Based Migraine Management in VA Primary Care Clinics by Utilizing Informatics Tools. - Amir Mohammad; Hamada Hamid; Cynthia Brandt (AMIA, 2015)

Exploring Healthcare Mobility in the US to Improve Quality of Care: Preliminary Results. - Karen H. Wang; Constance Carroll; Brenda Fenton; Samah J. Fodeh; Joseph Erdos; Marcella Nunez-Smith; Amy Justice; Cynthia Brandt (AMIA, 2015)

Laplacian SVM Based Feature Selection Improves Medical Event Reports Classification. - Samah Jamal Fodeh; Andrea L. Benin; Perry L. Miller; Kyle Lee; Michele Koss; Cynthia Brandt (ICDM Workshops, 2015)

Evaluation of UMLS Term Coverage for Echocardiogram Measures. - Olga V. Patterson; Matthew Freiberg; Cynthia Brandt; Scott L. DuVall (AMIA, 2016)

Improving Pain Assessment in Medical Intensive Care Unit Through Natural Language Processing. - Douglas Redd; Qing T. Zeng; Cynthia Brandt; Kathleen Akgün (AMIA, 2016)

Event Coreference in Support of Temporal Reasoning in Mental Health Notes. - Ruth M. Reeves; Marcus Verhagen; Cynthia Brandt; Wendy W. Chapman; Michael E. Matheny; Steven H. Brown; Brian Marx; Theodore Speroff (AMIA, 2016)

Classification of radiology reports for falls in an HIV study cohort. - Jonathan Bates; Samah J. Fodeh; Cynthia Brandt; Julie A. Womack (J. Am. Medical Informatics Assoc., 2016)

Phenotyping physiologic measurement of lung function in a large electronic health record using automated tools. - Kathleen M. Akgün; Keith Sigel; Kei Cheung; Farah Kidwai-Khan; Alex K. Bryant; Cynthia Brandt; Amy C. Justice; Kristina Crothers (AMIA, 2017)

An Evolving Ecosystem for Natural Language Processing in Department of Veterans Affairs. - Jennifer H. Garvin; Megha Kalsy; Cynthia Brandt; Stephen Luther; Guy Divita; Gregorio Coronado; Douglas Redd; Qing T. Zeng (CRI, 2017)

A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling. - Roxanne Wadia; Mark A. Shifman; Forrest W. Levin; Luis N. Marenco; Cynthia Brandt; Kei-Hoi Cheung; Tamar H. Taddei; Michael Krauthammer (CRI, 2017)

Leveraging Twitter to better identify suicide risk. - Samah J. Fodeh; Joseph L. Goulet; Cynthia Brandt; Al-Talib Hamada (MIH@KDD, 2017)

Classifying Clinical Notes with Pain Assessment. - Samah J. Fodeh; Dezon Finch; Lina Bouayad; Stephen Luther; Robert D. Kerns; Cynthia Brandt (MedInfo, 2017)

An Evolving Ecosystem for Natural Language Processing in Department of Veterans Affairs. - Jennifer H. Garvin; Megha Kalsy; Cynthia Brandt; Stephen L. Luther; Guy Divita; Gregory Coronado; Doug Redd; Carrie M. Christensen; Brent Hill; Natalie Kelly; Qing Zeng-Treitler (J. Medical Syst., 2017)

Utilizing patient data from the veterans administration electronic health record to support web-based clinical decision support: informatics challenges and issues from three clinical domains. - Nallakkandi Rajeevan; Kristina M. Niehoff; Peter Charpentier; Forrest L. Levin; Amy Justice; Cynthia Brandt; Terri R. Fried; Perry L. Miller (BMC Medical Informatics Decis. Mak., 2017)

A Common Web Interface Provides Access to Clinical Databases Using REDCap and Python. - Michael Concato; Charles Lu 003; Farah Kidwai; Cynthia Brandt; Kei Cheung (AMIA, 2018)

Notes from the Field: Real-World Clinical Information Exchange between Electronic Health Records. - Karen H. Wang; Erica Moreira; Todd Kawecki; Amy C. Justice; Marcella Nunez-Smith; Cynthia Brandt; Nitu Kashyap (AMIA, 2018)

Suicide Risk on Twitter. - Samah Jamal Fodeh; Edwin D. Boudreaux; Rixin Wang; Dennis Silva; Robert Bossarte; Joseph L. Goulet; Cynthia Brandt; Al-Talib Hamada (Int. J. Knowl. Discov. Bioinform., 2018)

Classifying clinical notes with pain assessment using machine learning. - Samah Jamal Fodeh; Dezon Finch; Lina Bouayad; Stephen L. Luther; Han Ling; Robert D. Kerns; Cynthia Brandt (Medical Biol. Eng. Comput., 2018)

A Pragmatic Multi-system Opioid Use Disorder Computable Phenotype for the Emergency Department. - David Chartash; Hyung M. Paek; Bill K. Ross; Dziura James; Nogee Daniel; Eric Boccio; Cory Hines; Aaron M. Schott; Molly M. Jeffery; Mehul D. Patel; Timothy F. Platts-Mills; Osama M. Ahmed; et al. (AMIA, 2019)

Preliminary chart review for Natural Language Processing development among electronic health records with documentation of marijuana use. - Termeh Feinberg; Joseph L. Goulet; Amy C. Justice; Samah Jamal Fodeh; Lori Bastian; Qing T. Zeng; Cynthia Brandt (AMIA, 2019)

Presecription opioid tapering: Mining structured and unstructured data. - Samah J. Fodeh; Jennifer Edelman; William Becker; Cynthia Brandt; Sally Haskell (AMIA, 2019)

The Nuts and Bolts of Sponsorship: Perspectives in Informatics. - Tiffany I. Leung; Marion J. Ball; Cynthia Brandt; Gretchen P. Jackson; Titus K. Schleyer (AMIA, 2019)

Explainable Deep Learning Applied to Understanding Opioid Use Disorder and Its Risk Factors. - Terri Elizabeth Workman; Qing Zeng-Treitler; YiJun Shao; Joel Kupersmith; Friedhelm Sandbrink; Joseph L. Goulet; Nawar M. Shaar; Christopher Spevak; Cynthia Brandt; Marc R. Blackman (IEEE BigData, 2019)

Automated Generation of CONSORT Diagrams Using Relational Database Software. - Teresa O'Leary; June Weiss; Benjamin Toll; Cynthia Brandt; Steven Bernstein (Appl. Clin. Inform., 2019)

Pain Assessment in Veterans Health Administration Chiropractic Clinic Documentation. - Brian C. Coleman; Samah J. Fodeh; Rixin Wang; Anthony J. Lisi; Alicia Heapy; Cynthia Brandt (AMIA, 2020)

Validation of the Data Quality of a Tumor Board Registry Through Assessment of Clinicopathologic Survival Outcomes in Melanoma Patients. - Katherine Given Ligtenberg; David Chartash; Marcus Bosenberg; Cynthia Brandt (AMIA, 2020)

Pain Management Collaboratory Coordinating Center (PMC3): Insights from Multiple Work Groups for Clinical Research Informatics Support. - Michael E. Matheny; Stephen L. Luther; William T. Roddy; Cynthia Brandt; Joseph J. Erdos (AMIA, 2020)

Leveraging Location Based Services for Analysis of Suicides in Rural Counties. - Barry Sly-Delgado; Meysam Ghaffari; Aastha Gunjan; Cynthia Brandt; Joseph L. Goulet; Karen H. Wang; Ashok Srinivasan (AMIA, 2020)

A Prototype Application to Identify LGBT Patients in Clinical Notes. - Terri Elizabeth Workman; Joseph L. Goulet; Cynthia Brandt; Melissa Skanderson; Rixin Wang; Allison R. Warren; Jacob Eleazer; Kirsha Gordon; Qing Zeng-Treitler (IEEE BigData, 2020)

Benchmark and Best Practices for Biomedical Knowledge Graph Embeddings. - David Chang; Ivana Balazevic; Carl Allen; Daniel Chawla; Cynthia Brandt; Richard Andrew Taylor (BioNLP, 2020)

Reducing Annotation Burden Through Multimodal Learning. - Kevin Lopez; Samah J. Fodeh; Ahmed Allam; Cynthia Brandt; Michael Krauthammer (Frontiers Big Data, 2020)

Towards Reducing Health Information Inequities in the Caribbean: The Eastern Caribbean Health Outcomes Research Network Data Sharing Platform Usability Study. - Terika McCall; Stephanie Date; Dorothy Alexis; Stephanie Whiteman; Salihah Dick; Luis N. Marenco; Meredith Campbell Britton; Baylah Tessier-Sherman; Cynthia Brandt; Karen H. Wang (MedInfo, 2021)

COVID-19 Insights Partnership: Leveraging big data from the Department of Veterans Affairs and supercomputers at the Department of Energy under the public health authority. - Rachel Ramoni; Molly Klote; Sumitra Muralidhar; Cynthia Brandt; Maya A. Bernstein; Benjamin H. McMahon; Daniel A. Jacobson; Amy C. Justice (J. Am. Medical Informatics Assoc., 2021)

Pharmacogenomics driven decision support prototype with machine learning: A framework for improving patient care. - Farah Kidwai-Khan; Christopher T. Rentsch; Rebecca Pulk; Charles Alcorn; Cynthia A. Brandt; Amy C. Justice (Frontiers Big Data, 2022)

Transphobia, encoded: an examination of trans-specific terminology in SNOMED CT and ICD-10-CM. - A Ram; Clair A. Kronk; Jacob Eleazer; Joseph L. Goulet; Cynthia Brandt; Karen H. Wang (J. Am. Medical Informatics Assoc., 2022)

A multicenter evaluation of computable phenotyping approaches for SARS-CoV-2 infection and COVID-19 hospitalizations. - Rohan Khera; Bobak J. Mortazavi; Veer Sangha; Frederick Warner; Hobart Patrick Young; Joseph S. Ross; Nilay D. Shah; Elitza S. Theel; William G. Jenkinson; Camille Knepper; Karen H. Wang; David Peaper; et al. (npj Digit. Medicine, 2022)

Leveraging Contextual Relatedness to Identify Suicide Documentation in Clinical Notes through Zero Shot Learning. - Terri Elizabeth Workman; Joseph L. Goulet; Cynthia A. Brandt; Allison R. Warren; Jacob Eleazer; Melissa Skanderson; Luke Lindemann; John R. Blosnich; John O. Leary; Qing Zeng-Treitler (CoRR, 2023)

Detection of left ventricular systolic dysfunction from single-lead electrocardiography adapted for portable and wearable devices. - Akshay Khunte; Veer Sangha; Evangelos K. Oikonomou; Lovedeep Singh Dhingra; Arya Aminorroaya; Bobak J. Mortazavi; Andreas Coppi; Cynthia A. Brandt; Harlan M. Krumholz; Rohan Khera (npj Digit. Medicine, 2023)

Design of Personal Health Libraries for People Returning from Incarceration in the United States. - Terika McCall; Amanda Levi; Mary Peng; Kristal Zhou; Meera Swaminath; Vignesh Harikrishnan; Terri Elizabeth Workman; Hadi Fooladi; Monya Saunders; Marisol Foumakoye; Meredith Campbell Britton; Sarah Teng; et al. (HICSS, 2024)

Safety challenges of AI in medicine. - Xiaoye Wang; Nicole Xi Zhang; Hongyu He; Trang Nguyen; Kun-Hsing Yu; Hao Deng; Cynthia Brandt; Danielle S. Bitterman; Ling Pan; Ching-Yu Cheng; James Zou; Dianbo Liu (CoRR, 2024)

A roadmap to artificial intelligence (AI): Methods for designing and building AI ready data to promote fairness. - Farah Kidwai-Khan; Rixin Wang; Melissa Skanderson; Cynthia A. Brandt; Samah Jamal Fodeh; Julie A. Womack (J. Biomed. Informatics, 2024)

StrokeClassifier: ischemic stroke etiology classification by ensemble consensus modeling using electronic health records. - Ho-Joon Lee; Lee H. Schwamm; Lauren H. Sansing; Hooman Kamel; Adam DeHavenon; Ashby C. Turner; Kevin N. Sheth; Smita Krishnaswamy; Cynthia Brandt; Hongyu Zhao 003; Harlan M. Krumholz; Richa Sharma (npj Digit. Medicine, 2024)

Social determinants of health extraction from clinical notes across institutions using large language models. - Vipina Kuttichi Keloth; Salih Selek; Qingyu Chen 001; Christopher Gilman; Sunyang Fu; Yifang Dang; Xinghan Chen; Xinyue Hu 002; Yujia Zhou 003; Huan He; Jungwei W. Fan 001; Karen Wang; et al. (npj Digit. Medicine, 2025)