Validation of an NSP-based (negative selection pattern) gene family identification strategy. - Ronald L. Frank; Cyriac Kandoth; Fikret Erçal (BMC Bioinform., 2008)

Angular Mobility Assisted Coverage in Directional Sensor Networks. - Cyriac Kandoth; Sriram Chellappan (NBiS, 2009)

A framework for automated enrichment of functionally significant inverted repeats in whole genomes. - Cyriac Kandoth; Fikret Erçal; Ronald L. Frank (BMC Bioinform., 2010)

PathScan: a tool for discerning mutational significance in groups of putative cancer genes. - Michael C. Wendl; John W. Wallis; Ling Lin; Cyriac Kandoth; Elaine R. Mardis; Richard K. Wilson; Li Ding (Bioinform., 2011)

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. - Ken Chen 001; John W. Wallis; Cyriac Kandoth; Joelle M. Kalicki-Veizer; Karen L. Mungall; Andrew J. Mungall; Steven J. M. Jones; Marco A. Marra; Timothy J. Ley; Elaine R. Mardis; Richard K. Wilson; John N. Weinstein; et al. (Bioinform., 2012)

Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma. - Kjong-Van Lehmann; André Kahles; Cyriac Kandoth; William Lee; Nikolaus Schultz; Oliver Stegle; Gunnar Rätsch (Pacific Symposium on Biocomputing, 2015)

Genome Modeling System: A Knowledge Management Platform for Genomics. - Malachi Griffith; Obi L. Griffith; Scott M. Smith; Avinash Ramu; Matthew B. Callaway; Anthony M. Brummett; Michael J. Kiwala; Adam C. Coffman; Allison A. Regier; Benjamin J. Oberkfell; Gabriel E. Sanderson; Thomas P. Mooney; et al. (PLoS Comput. Biol., 2015)