Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data. - Susan Higashi; Cyril Fournier; Christian Gautier; Christine Gaspin; Marie-France Sagot (BMC Bioinform., 2015)

BATMAN: Statistical analysis for expensive computer codes made easy. - Pamphile T. Roy; Sophie Ricci; Romain Dupuis; Robin Campet; Jean-Christophe Jouhaud; Cyril Fournier (J. Open Source Softw., 2018)

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data. - Iván Dotú; Scott I. Adamson; Benjamin Coleman; Cyril Fournier; Emma Ricart-Altimiras; Eduardo Eyras; Jeffrey H. Chuang (PLoS Comput. Biol., 2018)