The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification. - Cyrus Afrasiabi; Bushra Samad; David Dineen; Christopher Meacham; Kimmen Sjölander (Nucleic Acids Res., 2013)

BioGPS: building your own mash-up of gene annotations and expression profiles. - Chunlei Wu; Xuefeng Jin; Ginger Tsueng; Cyrus Afrasiabi; Andrew I. Su (Nucleic Acids Res., 2016)

The SmartAPI Ecosystem for Making Web APIs FAIR. - Shima Dastgheib; Trish Whetzel; Amrapali Zaveri; Cyrus Afrasiabi; Pedro Assis; Paul Avillach; Kathleen M. Jagodnik; Gabor Korodi; Marcin Pilarczyk; Jeff de Pons; Stephan C. Schürer; Raymond Terryn; et al. (ISWC (Posters, Demos & Industry Tracks), 2017)

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration. - Jiwen Xin; Cyrus Afrasiabi; Sebastien Lelong; Julee Adesara; Ginger Tsueng; Andrew I. Su; Chunlei Wu (BMC Bioinform., 2018)

ChlamBase: a curated model organism database for the Chlamydia research community. - Tim E. Putman; Kevin Hybiske; Derek Jow; Cyrus Afrasiabi; Sebastien Lelong; Marco Alvarado Cano; Gregory S. Stupp; Andra Waagmeester; Benjamin M. Good; Chunlei Wu; Andrew I. Su (Database J. Biol. Databases Curation, 2019)

ChlamBase: a curated model organism database for the Chlamydia research community. - Tim E. Putman; Kevin Hybiske; Derek Jow; Cyrus Afrasiabi; Sebastien Lelong; Marco Alvarado Cano; Chunlei Wu; Andrew I. Su (Database J. Biol. Databases Curation, 2019)

BioThings SDK: a toolkit for building high-performance data APIs in biomedical research. - Sebastien Lelong; Xinghua Zhou; Cyrus Afrasiabi; Zhongchao Qian; Marco Alvarado Cano; Ginger Tsueng; Jiwen Xin; Julia Mullen; Yao Yao 007; Ricardo Avila; Greg Taylor; Andrew I. Su; et al. (Bioinform., 2022)