Reconstruction of 3-D Branching Structures. - Christopher J. Henri; D. Louis Collins; Terry M. Peters (IPMI, 1991)

Model-based segmentation of individual brain structures from MRI data. - D. Louis Collins; Terence M. Peters; Weiqian Dai; Alan C. Evans (VBC, 1992)

Toward frameless stereotaxy: anatomical-vascular correlation and registration. - Christopher J. Henri; A. Cukiert; D. Louis Collins; Andre Olivier; Terence M. Peters (VBC, 1992)

Model-based 3-D segmentation of multiple sclerosis lesions in dual-echo MRI data. - Micheline Kamber; D. Louis Collins; Rajjan Shinghal; Gordon S. Francis; Alan C. Evans (VBC, 1992)

Automated 3D nonlinear deformation procedure for determination of gross morphometric variability in human brain. - D. Louis Collins; Terence M. Peters; Alan C. Evans (VBC, 1994)

Model-based 3-D segmentation of multiple sclerosis lesions in magnetic resonance brain images. - Micheline Kamber; Rajjan Shinghal; D. Louis Collins; Gordon S. Francis; Alan C. Evans (IEEE Trans. Medical Imaging, 1995)

Cortical Constraints for Non-Linear Cortical Registration. - D. Louis Collins; Georges Le Goualher; Raghu Venugopal; A. Caramanos; Alan C. Evans; Christian Barillot (VBC, 1996)

Animal: Validation and Applications of Nonlinear Registration-Based Segmentation. - D. Louis Collins; Alan C. Evans (Int. J. Pattern Recognit. Artif. Intell., 1997)

Non-linear Cerebral Registration with Sulcal Constraints. - D. Louis Collins; Georges Le Goualher; Alan C. Evans (MICCAI, 1998)

Automatic Identification of Cortical Sulci Using a 3D Probabilistic Atlas. - Georges Le Goualher; D. Louis Collins; Christian Barillot; Alan C. Evans (MICCAI, 1998)

Design and Construction of a Realistic Digital Brain Phantom. - D. Louis Collins; Alex P. Zijdenbos; Vasken Kollokian; John G. Sled; Noor Jehan Kabani; Colin J. Holmes; Alan C. Evans (IEEE Trans. Medical Imaging, 1998)

Automated atlas integration and interactive 3-dimensional visualization tools for planning and guidance of functional neurosurgery. - Philippe St. Jean; Abbas F. Sadikot; D. Louis Collins; Diego Clonda; Reza Kasrai; Alan C. Evans; Terry M. Peters (IEEE Trans. Medical Imaging, 1998)

ANIMAL+INSECT: Improved Cortical Structure Segmentation. - D. Louis Collins; Alex P. Zijdenbos; Wim F. C. Baaré; Alan C. Evans (IPMI, 1999)

Automated Extraction and Variability Analysis of Sulcal Neuroanatomy. - Georges Le Goualher; Emmanuel Procyk; D. Louis Collins; Raghu Venugopal; Christian Barillot; Alan C. Evans (IEEE Trans. Medical Imaging, 1999)

Automated Estimation of Brain Volume in Multiple Sclerosis with BICCR. - D. Louis Collins; Johan Montagnat; Alex P. Zijdenbos; Alan C. Evans; Douglas L. Arnold (IPMI, 2001)

Automatic Non-linear MRI-Ultrasound Registration for the Correction of Intra-operative Brain Deformations. - Tal Arbel; Xavier Morandi; Roch M. Comeau; D. Louis Collins (MICCAI, 2001)

Analysis of 3D Deformation Fields for Appearance-Based Segmentation. - Simon Duchesne; D. Louis Collins (MICCAI, 2001)

Retrospective Evaluation of Inter-subject Brain Registration. - Pierre Hellier; Christian Barillot; Isabelle Corouge; Bernard Gibaud; Georges Le Goualher; D. Louis Collins; Alan C. Evans; Grégoire Malandain; Nicholas Ayache (MICCAI, 2001)

Knowledge-based extraction of cerebral vasculature from anatomical MRI. - Lasse Riis Østergaard; Ole Vilhelm Larsen; Jens P. Haase; Frédérick Van Meer; Alan C. Evans; D. Louis Collins (Image Processing, 2001)

Application of Information Technology: A Four-Dimensional Probabilistic Atlas of the Human Brain. - John C. Mazziotta; Arthur W. Toga; Alan C. Evans; Peter T. Fox; Jack L. Lancaster; Karl Zilles; Roger P. Woods; Tomás Paus; Gregory Simpson; G. Bruce Pike; Colin J. Holmes; D. Louis Collins; et al. (J. Am. Medical Informatics Assoc., 2001)

A Unified Statistical Approach to Deformation-Based Morphometry. - Moo K. Chung; Keith J. Worsley; Tomás Paus; C. Cherif; D. Louis Collins; Jay N. Giedd; Judith L. Rapoport; Alan C. Evans (NeuroImage, 2001)

On the Classification of Temporal Lobe Epilepsy Using MR Image Appearance. - Simon Duchesne; Neda Bernasconi; Andrea Bernasconi; D. Louis Collins (ICPR (1), 2002)

Statistical Analysis of Longitudinal MRI Data: Applications for Detection of Disease Activity in MS. - Sylvain Prima; Nicholas Ayache; Andrew L. Janke; Simon J. Francis; Douglas L. Arnold; D. Louis Collins (MICCAI (1), 2002)

Computational Models of MRI Characteristics of Focal Cortical Dysplasia Improve Lesion Detection. - Samson B. Antel; Andrea Bernasconi; Neda Bernasconi; D. Louis Collins; Robert E. Kearney; Rajjan Shinghal; Douglas L. Arnold (NeuroImage, 2002)

Appearance-Based Segmentation of Medial Temporal Lobe Structures. - Simon Duchesne; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2002)

Object-Based Strategy for Morphometry of the Cerebral Cortex. - Jean-François Mangin; Denis Rivière; Arnaud Cachia; Dimitri Papadopoulos-Orfanos; D. Louis Collins; Alan C. Evans; Jean Régis (IPMI, 2003)

The Creation of a Brain Atlas for Image Guided Neurosurgery Using Serial Histological Data. - M. Mallar Chakravarty; Gilles Bertrand 002; Maxime Descoteaux; Abbas F. Sadikot; D. Louis Collins (MICCAI (1), 2003)

Temporal Lobe Epilepsy Lateralization Based on MR Image Intensity and Registration Features. - Simon Duchesne; Neda Bernasconi; Andrew L. Janke; Andrea Bernasconi; D. Louis Collins (MICCAI (1), 2003)

3D Moment Invariant Based Morphometry. - Jean-François Mangin; Fabrice Poupon; Denis Rivière; Arnaud Cachia; D. Louis Collins; Alan C. Evans; Jean Régis (MICCAI (2), 2003)

Multivariate Statistics for Detection of MS Activity in Serial Multimodal MR Images. - Sylvain Prima; Douglas L. Arnold; D. Louis Collins (MICCAI (1), 2003)

Automated detection of focal cortical dysplasia lesions using computational models of their MRI characteristics and texture analysis. - Samson B. Antel; D. Louis Collins; Neda Bernasconi; Frederick Andermann; Rajjan Shinghal; Robert E. Kearney; Douglas L. Arnold; Andrea Bernasconi (NeuroImage, 2003)

Retrospective Evaluation of Inter-subject Brain Registration. - Pierre Hellier; Christian Barillot; Isabelle Corouge; Bernard Gibaud; Georges Le Goualher; D. Louis Collins; Alan C. Evans; Grégoire Malandain; Nicholas Ayache; Gary E. Christensen; Hans J. Johnson (IEEE Trans. Medical Imaging, 2003)

A Multi-scale Geometric Flow for Segmenting Vasculature in MRI. - Maxime Descoteaux; D. Louis Collins; Kaleem Siddiqi (ECCV Workshops CVAMIA and MMBIA, 2004)

Geometric Flows for Segmenting Vasculature in MRI: Theory and Validation. - Maxime Descoteaux; D. Louis Collins; Kaleem Siddiqi (MICCAI (1), 2004)

Temporal Lobe Epilepsy Surgical Outcome Prediction. - Simon Duchesne; Neda Bernasconi; Andrea Bernasconi; D. Louis Collins (MICCAI (2), 2004)

Vessel Driven Correction of Brain Shift. - Ingerid Reinertsen; Maxime Descoteaux; Simon Drouin; Kaleem Siddiqi; D. Louis Collins (MICCAI (2), 2004)

Brain morphometry using 3D moment invariants. - Jean-François Mangin; Fabrice Poupon; Edouard Duchesnay; Denis Rivière; Arnaud Cachia; D. Louis Collins; Alan C. Evans; Jean Régis (Medical Image Anal., 2004)

Tuning and comparing spatial normalization methods. - Steven M. Robbins; Alan C. Evans; D. Louis Collins; Sue Whitesides (Medical Image Anal., 2004)

Whole-brain voxel-based statistical analysis of gray matter and white matter in temporal lobe epilepsy. - Neda Bernasconi; Simon Duchesne; Andrew L. Janke; Jason P. Lerch; D. Louis Collins; Andrea Bernasconi (NeuroImage, 2004)

Relating neocortical pathology to disability progression in multiple sclerosis using MRI. - J. T. Chen; Sridar Narayanan; D. Louis Collins; Steve M. Smith 001; Paul M. Matthews; Douglas L. Arnold (NeuroImage, 2004)

Focal white matter density changes in schizophrenia: reduced inter-hemispheric connectivity. - Hilleke E. Hulshoff Pol; Hugo G. Schnack; René C. W. Mandl; Wiepke Cahn; D. Louis Collins; Alan C. Evans; René S. Kahn (NeuroImage, 2004)

Object-based morphometry of the cerebral cortex. - Jean-François Mangin; Denis Rivière; Arnaud Cachia; Edouard Duchesnay; Yann Cointepas; Dimitri Papadopoulos-Orfanos; D. Louis Collins; Alan C. Evans; Jean Régis (IEEE Trans. Medical Imaging, 2004)

Anatomical and Electrophysiological Validation of an Atlas for Neurosurgical Planning. - M. Mallar Chakravarty; Abbas F. Sadikot; Jürgen Germann; Gilles Bertrand 002; D. Louis Collins (MICCAI (2), 2005)

Predicting Clinical Variable from MRI Features: Application to MMSE in MCI. - Simon Duchesne; Anna Caroli; Cristina Geroldi; Giovanni B. Frisoni; D. Louis Collins (MICCAI, 2005)

Maximum a Posteriori Local Histogram Estimation for Image Registration. - Matthew Toews; D. Louis Collins; Tal Arbel (MICCAI (2), 2005)

Hippocampal shape analysis using medial surfaces. - Sylvain Bouix; Jens C. Pruessner; D. Louis Collins; Kaleem Siddiqi (NeuroImage, 2005)

Local magnetization transfer ratio signal inhomogeneity is related to subsequent change in MTR in lesions and normal-appearing white-matter of multiple sclerosis patients. - J. T. Chen; D. Louis Collins; M. S. Freedman; H. L. Atkins; Douglas L. Arnold; Canadian MS/BMT Study Group (NeuroImage, 2005)

Bayesian MS Lesion Classification Modeling Regional and Local Spatial Information. - Rola Harmouche; D. Louis Collins; Douglas L. Arnold; Simon J. Francis; Tal Arbel (ICPR (3), 2006)

Realistic Simulated MRI and SPECT Databases. - Bérengère Aubert-Broche; Christophe Grova; Anthonin Reilhac; Alan C. Evans; D. Louis Collins (MICCAI (1), 2006)

Towards a Multi-modal Atlas for Neurosurgical Planning. - M. Mallar Chakravarty; Abbas F. Sadikot; Sanjay Mongia; Gilles Bertrand 002; D. Louis Collins (MICCAI (2), 2006)

Automated Analysis of Multi Site MRI Phantom Data for the NIHPD Project. - Luke Fu; Vladimir S. Fonov; G. Bruce Pike; Alan C. Evans; D. Louis Collins (MICCAI (2), 2006)

Symmetric Atlasing and Model Based Segmentation: An Application to the Hippocampus in Older Adults. - Günther Grabner; Andrew L. Janke; Marc M. Budge; David Smith; Jens C. Pruessner; D. Louis Collins (MICCAI (2), 2006)

A Statistical Parts-Based Appearance Model of Inter-subject Variability. - Matthew Toews; D. Louis Collins; Tal Arbel (MICCAI (1), 2006)

A new improved version of the realistic digital brain phantom. - Bérengère Aubert-Broche; Alan C. Evans; D. Louis Collins (NeuroImage, 2006)

The creation of a brain atlas for image guided neurosurgery using serial histological data. - M. Mallar Chakravarty; Gilles Bertrand 002; Charles P. Hodge; Abbas F. Sadikot; D. Louis Collins (NeuroImage, 2006)

MR-based neurological disease classification methodology: Application to lateralization of seizure focus in temporal lobe epilepsy. - Simon Duchesne; Neda Bernasconi; Andrea Bernasconi; D. Louis Collins (NeuroImage, 2006)

Gray and white matter density changes in monozygotic and same-sex dizygotic twins discordant for schizophrenia using voxel-based morphometry. - Hilleke E. Hulshoff Pol; Hugo G. Schnack; René C. W. Mandl; Rachel G. H. Brans; Neeltje E. M. van Haren; Wim F. C. Baaré; Clarine J. van Oel; D. Louis Collins; Alan C. Evans; René S. Kahn (NeuroImage, 2006)

Twenty New Digital Brain Phantoms for Creation of Validation Image Data Bases. - Bérengère Aubert-Broche; M. Griffin; G. Bruce Pike; Alan C. Evans; D. Louis Collins (IEEE Trans. Medical Imaging, 2006)

Validation of vessel-based registration for correction of brain shift. - Ingerid Reinertsen; Maxime Descoteaux; Kaleem Siddiqi; D. Louis Collins (Medical Image Anal., 2007)

Clinical validation of vessel-based registration for correction of brain-shift. - Ingerid Reinertsen; Frank Lindseth; Geirmund Unsgård; D. Louis Collins (Medical Image Anal., 2007)

Voxel-based analysis of the evolution of magnetization transfer ratio to quantify remyelination and demyelination with histopathological validation in a multiple sclerosis lesion. - J. T. Chen; T. Kuhlmann; G. H. Jansen; D. Louis Collins; H. L. Atkins; M. S. Freedman; P. W. O'Connor; Douglas L. Arnold; Canadian MS/BMT Study Group (NeuroImage, 2007)

Joint level-set shape modeling and appearance modeling for brain structure segmentation. - Shiyan Hu 003; D. Louis Collins (NeuroImage, 2007)

Three-dimensional reconstruction of serial histological mouse brain sections. - M. Mallar Chakravarty; Barry J. Bedell; Simone P. Zehntner; Alan C. Evans; D. Louis Collins (ISBI, 2008)

Development of FMRI techniques for planning in functional neurosurgery for Parkinson's disease. - M. Mallar Chakravarty; Pedro Rosa-Neto; Scott Broadbent; Alan C. Evans; D. Louis Collins (ISBI, 2008)

MRI inter-packet movement correction for images acquired with non-complementary data. - Elias Gedamu; Abraham Gedamu; Douglas L. Arnold; D. Louis Collins (ISBI, 2008)

Acoustic shadows detection, application to accurate reconstruction of 3D intraoperative ultrasound. - Pierre Hellier; Pierrick Coupé; Pierre Meyer; Xavier Morandi; D. Louis Collins (ISBI, 2008)

Human Brain Myelination from Birth to 4.5 Years. - Bérengère Aubert-Broche; Vladimir S. Fonov; Ilana Leppert; G. Bruce Pike; D. Louis Collins (MICCAI (2), 2008)

Deformable Ultrasound Registration without Reconstruction. - Rupert Brooks; D. Louis Collins; Xavier Morandi; Tal Arbel (MICCAI (2), 2008)

Towards a validation of atlas warping techniques. - M. Mallar Chakravarty; Abbas F. Sadikot; Jürgen Germann; Gilles Bertrand 002; D. Louis Collins (Medical Image Anal., 2008)

A geometric flow for segmenting vasculature in proton-density weighted MRI. - Maxime Descoteaux; D. Louis Collins; Kaleem Siddiqi (Medical Image Anal., 2008)

MRI-Based Automated Computer Classification of Probable AD Versus Normal Controls. - Simon Duchesne; Anna Caroli; Cristina Geroldi; Christian Barillot; Giovanni B. Frisoni; D. Louis Collins (IEEE Trans. Medical Imaging, 2008)

Automatically Learning Cortical Folding Patterns. - Matthew Toews; D. Louis Collins; Tal Arbel (ISBI, 2009)

Towards Accurate, Automatic Segmentation of the Hippocampus and Amygdala from MRI. - D. Louis Collins; Jens C. Pruessner (MICCAI (1), 2009)

An Object-Based Method for Rician Noise Estimation in MR Images. - Pierrick Coupé; José V. Manjón; Elias Gedamu; Douglas L. Arnold; Montserrat Robles; D. Louis Collins (MICCAI (1), 2009)

Multiple Sclerosis Lesion Segmentation Using an Automatic Multimodal Graph Cuts. - Daniel García-Lorenzo; Jérémy Lecoeur; Douglas L. Arnold; D. Louis Collins; Christian Barillot (MICCAI (1), 2009)

Feature-Based Morphometry. - Matthew Toews; William M. Wells III; D. Louis Collins; Tal Arbel (MICCAI (1), 2009)

Multi-channel MRI segmentation with graph cuts using spectral gradient and multidimensional Gaussian mixture model. - Jérémy Lecoeur; Jean-Christophe Ferré; D. Louis Collins; Sean Patrick Morrisey; Christian Barillot (Image Processing, 2009)

A Comparative Study of Monoscopic and Stereoscopic Display for a Probe-Positioning Task. - Guangyu Wang; Laurence Mercier; D. Louis Collins; Jeremy R. Cooperstock (MMVR, 2009)

Clustering of atlas-defined cortical regions based on relaxation times and proton density. - Bérengère Aubert-Broche; Christophe Grova; G. Bruce Pike; D. Louis Collins (NeuroImage, 2009)

Motion correction of multi-frame PET data in neuroreceptor mapping: Simulation based validation. - Nicolas Costes 001; Alain Dagher; Kevin Larcher; Alan C. Evans; D. Louis Collins; Anthonin Reilhac (NeuroImage, 2009)

Relating one-year cognitive change in mild cognitive impairment to baseline MRI features. - Simon Duchesne; Anna Caroli; Cristina Geroldi; D. Louis Collins; Giovanni B. Frisoni (NeuroImage, 2009)

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. - Arno Klein; Jesper L. R. Andersson; Babak A. Ardekani; John Ashburner; Brian B. Avants; Ming-Chang Chiang; Gary E. Christensen; D. Louis Collins; James C. Gee; Pierre Hellier; Joo Hyun Song; Mark Jenkinson; et al. (NeuroImage, 2009)

Sensitivity of voxel-based morphometry analysis to choice of imaging protocol at 3 T. - Christine L. Tardif; D. Louis Collins; G. Bruce Pike (NeuroImage, 2009)

Improved Precision in the Measurement of Longitudinal Global and Regional Volumetric Changes via a Novel MRI Gradient Distortion Characterization and Correction Technique. - Vladimir S. Fonov; Andrew L. Janke; Zografos Caramanos; Douglas L. Arnold; Sridar Narayanan; G. Bruce Pike; D. Louis Collins (MIAR, 2010)

Robust 3D Reconstruction and Mean-Shift Clustering of Motoneurons from Serial Histological Images. - Nicolas Guizard; Pierrick Coupé; Nicolas Stifani; Stefano Stifani; D. Louis Collins (MIAR, 2010)

DVV: Towards a Taxonomy for Mixed Reality Visualization in Image Guided Surgery. - Marta Kersten-Oertel; Pierre Jannin; D. Louis Collins (MIAR, 2010)

An Anthropomorphic Polyvinyl Alcohol Triple-Modality Brain Phantom Based on Colin27. - Sean Jy-Shyang Chen; Pierre Hellier; Jean-Yves Gauvrit; Maud Marchal; Xavier Morandi; D. Louis Collins (MICCAI (2), 2010)

Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation. - Pierrick Coupé; José V. Manjón; Vladimir S. Fonov; Jens C. Pruessner; Montserrat Robles; D. Louis Collins (MICCAI (3), 2010)

Bayesian Classification of Multiple Sclerosis Lesions in Longitudinal MRI Using Subtraction Images. - Colm Elliott; Simon J. Francis; Douglas L. Arnold; D. Louis Collins; Tal Arbel (MICCAI (2), 2010)

Detection of Gad-Enhancing Lesions in Multiple Sclerosis Using Conditional Random Fields. - Zahra Karimaghaloo; Mohak Shah; Simon J. Francis; Douglas L. Arnold; D. Louis Collins; Tal Arbel (MICCAI (3), 2010)

Hierarchical Multimodal Image Registration Based on Adaptive Local Mutual Information. - Dante De Nigris; Laurence Mercier; Rolando Del Maestro; D. Louis Collins; Tal Arbel (MICCAI (2), 2010)

Exploring Cortical Folding Pattern Variability Using Local Image Features. - Rishi Rajalingham; Matthew Toews; D. Louis Collins; Tal Arbel (MCV, 2010)

Segmentation of Cortical MS Lesions on MRI Using Automated Laminar Profile Shape Analysis. - Christine L. Tardif; D. Louis Collins; Simon F. Eskildsen; John B. Richardson; G. Bruce Pike (MICCAI (3), 2010)

Optimal Gaussian Mixture Models of Tissue Intensities in Brain MRI of Patients with Multiple-Sclerosis. - Yiming Xiao; Mohak Shah; Simon J. Francis; Douglas L. Arnold; Tal Arbel; D. Louis Collins (MLMI, 2010)

MRI Superresolution Using Self-Similarity and Image Priors. - José V. Manjón; Pierrick Coupé; Antonio Buades; D. Louis Collins; Montserrat Robles (Int. J. Biomed. Imaging, 2010)

Robust Rician noise estimation for MR images. - Pierrick Coupé; José V. Manjón; Elias Gedamu; Douglas L. Arnold; Montserrat Robles; D. Louis Collins (Medical Image Anal., 2010)

An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images. - Pierre Hellier; Pierrick Coupé; Xavier Morandi; D. Louis Collins (Medical Image Anal., 2010)

Non-local MRI upsampling. - José V. Manjón; Pierrick Coupé; Antonio Buades; Vladimir S. Fonov; D. Louis Collins; Montserrat Robles (Medical Image Anal., 2010)

Gradient distortions in MRI: Characterizing and correcting for their effects on SIENA-generated measures of brain volume change. - Zografos Caramanos; Vladimir S. Fonov; Simon J. Francis; Sridar Narayanan; G. Bruce Pike; D. Louis Collins; Douglas L. Arnold (NeuroImage, 2010)

Corrigendum to "Gradient distortions in MRI: Characterizing and correcting for their effects on SIENA-generated measures of brain volume change" [NeuroImage 49 (2010) 1601-1611]. - Zografos Caramanos; Vladimir S. Fonov; Simon J. Francis; Sridar Narayanan; G. Bruce Pike; D. Louis Collins; Douglas L. Arnold (NeuroImage, 2010)

Towards accurate, automatic segmentation of the hippocampus and amygdala from MRI by augmenting ANIMAL with a template library and label fusion. - D. Louis Collins; Jens C. Pruessner (NeuroImage, 2010)

Evaluation of automated techniques for the quantification of grey matter atrophy in patients with multiple sclerosis. - Mishkin Derakhshan; Zografos Caramanos; Paul S. Giacomini; Sridar Narayanan; Josefina Maranzano; Simon J. Francis; Douglas L. Arnold; D. Louis Collins (NeuroImage, 2010)

Feature-based morphometry: Discovering group-related anatomical patterns. - Matthew Toews; William M. Wells III; D. Louis Collins; Tal Arbel (NeuroImage, 2010)

Spatial intensity prior correction for tissue segmentation in the developing human brain. - Sun Hyung Kim; Vladimir S. Fonov; Joseph Piven; John H. Gilmore; Clement Vachet; Guido Gerig; D. Louis Collins; Martin Styner (ISBI, 2011)

Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer's Disease. - Pierrick Coupé; Simon F. Eskildsen; José V. Manjón; Vladimir S. Fonov; D. Louis Collins (MICCAI (3), 2011)

A Realistic Test and Development Environment for Mixed Reality in Neurosurgery. - Simon Drouin; Marta Kersten-Oertel; Sean Jy-Shyang Chen; D. Louis Collins (AE-CAI, 2011)

Adapted MRF Segmentation of Multiple Sclerosis Lesions Using Local Contextual Information. - Nagesh K. Subbanna; Simon J. Francis; Doina Precup; D. Louis Collins; Douglas L. Arnold; Tal Arbel (MIUA, 2011)

New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: system description and validation. - Laurence Mercier; Rolando Del Maestro; Kevin Petrecca; Anna Kochanowska; Simon Drouin; Charles X. B. Yan; Andrew L. Janke; Sean Jy-Shyang Chen; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2011)

Towards accurate, robust and practical ultrasound-CT registration of vertebrae for image-guided spine surgery. - Charles X. B. Yan; Benoît Goulet; Julie Pelletier; Sean Jy-Shyang Chen; Donatella Tampieri; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2011)

Evaluating intensity normalization on MRIs of human brain with multiple sclerosis. - Mohak Shah; Yiming Xiao; Nagesh K. Subbanna; Simon J. Francis; Douglas L. Arnold; D. Louis Collins; Tal Arbel (Medical Image Anal., 2011)

Regional brain atrophy in children with multiple sclerosis. - Bérengère Aubert-Broche; Vladimir S. Fonov; R. Ghassemi; Sridar Narayanan; Douglas L. Arnold; Brenda Banwell; John G. Sled; D. Louis Collins (NeuroImage, 2011)

Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. - Pierrick Coupé; José V. Manjón; Vladimir S. Fonov; Jens C. Pruessner; Montserrat Robles; D. Louis Collins (NeuroImage, 2011)

Unbiased average age-appropriate atlases for pediatric studies. - Vladimir S. Fonov; Alan C. Evans; Kelly N. Botteron; C. Robert Almli; Robert C. McKinstry; D. Louis Collins (NeuroImage, 2011)

An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space). - Stephen Frey; Deepak N. Pandya; M. Mallar Chakravarty; Lara Bailey; Michael Petrides; D. Louis Collins (NeuroImage, 2011)

Appearance-based modeling for segmentation of hippocampus and amygdala using multi-contrast MR imaging. - Shiyan Hu 003; Pierrick Coupé; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2011)

Multivariate analysis of MRI data for Alzheimer's disease, mild cognitive impairment and healthy controls. - Eric Westman; Andrew Simmons 001; Yi Zhang; Sebastian Muehlboeck; Catherine Tunnard; Yawu Liu; D. Louis Collins; Alan C. Evans; Patrizia Mecocci; Bruno Vellas; Magda Tsolaki; Iwona Kloszewska; et al. (NeuroImage, 2011)

Trimmed-Likelihood Estimation for Focal Lesions and Tissue Segmentation in Multisequence MRI for Multiple Sclerosis. - Daniel García-Lorenzo; Sylvain Prima; Douglas L. Arnold; D. Louis Collins; Christian Barillot (IEEE Trans. Medical Imaging, 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. - Keelin Murphy; Bram van Ginneken; Joseph M. Reinhardt; Sven Kabus; Kai Ding 003; Xiang Deng; Kunlin Cao; Kaifang Du; Gary E. Christensen; Vincent Garcia; Tom Vercauteren; Nicholas Ayache; et al. (IEEE Trans. Medical Imaging, 2011)

Fast and Robust Registration Based on Gradient Orientations: Case Study Matching Intra-operative Ultrasound to Pre-operative MRI in Neurosurgery. - Dante De Nigris; D. Louis Collins; Tal Arbel (IPCAI, 2012)

Atlas-Based Segmentation of the Subthalamic Nucleus, Red Nucleus, and Substantia Nigra for Deep Brain Stimulation by Incorporating Multiple MRI Contrasts. - Yiming Xiao; Lara Bailey; M. Mallar Chakravarty; Silvain Bériault; Abbas F. Sadikot; G. Bruce Pike; D. Louis Collins (IPCAI, 2012)

Atlas-based clustering of sulcal patterns - Application to the left inferior frontal sulcus. - Olivier Coulon; Vladimir S. Fonov; Jean-François Mangin; D. Louis Collins (ISBI, 2012)

A New Framework for Analyzing Structural Volume Changes of Longitudinal Brain MRI Data. - Bérengère Aubert-Broche; Vladimir S. Fonov; Daniel García-Lorenzo; Abderazzak Mouiha; Nicolas Guizard; Pierrick Coupé; Simon F. Eskildsen; D. Louis Collins (STIA, 2012)

A Prospective Evaluation of Computer-Assisted Deep Brain Stimulation Trajectory Planning. - Silvain Bériault; Simon Drouin; Abbas F. Sadikot; Yiming Xiao; D. Louis Collins; G. Bruce Pike (CLIP, 2012)

Towards Computer-Assisted Deep Brain Stimulation Targeting with Multiple Active Contacts. - Silvain Bériault; Yiming Xiao; Lara Bailey; D. Louis Collins; Abbas F. Sadikot; G. Bruce Pike (MICCAI (1), 2012)

Spatio-temporal Regularization for Longitudinal Registration to an Unbiased 3D Individual Template. - Nicolas Guizard; Vladimir S. Fonov; Daniel García-Lorenzo; Bérengère Aubert-Broche; Simon F. Eskildsen; D. Louis Collins (STIA, 2012)

Hierarchical Conditional Random Fields for Detection of Gad-Enhancing Lesions in Multiple Sclerosis. - Zahra Karimaghaloo; Douglas L. Arnold; D. Louis Collins; Tal Arbel (MICCAI (2), 2012)

Self-similarity Weighted Mutual Information: A New Nonrigid Image Registration Metric. - Hassan Rivaz; D. Louis Collins (MICCAI (3), 2012)

Visualizing the path of blood flow in static vessel images for image guided surgery of cerebral arteriovenous malformations. - Sean Jy-Shyang Chen; Marta Kersten-Oertel; Simon Drouin; D. Louis Collins (Image-Guided Procedures, 2012)

Augmented Reality Visualization for Guidance in Neurovascular Surgery. - Marta Kersten-Oertel; Sean Jy-Shyang Chen; Simon Drouin; David S. Sinclair; D. Louis Collins (MMVR, 2012)

A multi-modal approach to computer-assisted deep brain stimulation trajectory planning. - Silvain Bériault; Fahd Al Subaie; D. Louis Collins; Abbas F. Sadikot; G. Bruce Pike (Int. J. Comput. Assist. Radiol. Surg., 2012)

Validation of a hybrid Doppler ultrasound vessel-based registration algorithm for neurosurgery. - Sean Jy-Shyang Chen; Ingerid Reinertsen; Pierrick Coupé; Charles X. B. Yan; Laurence Mercier; Rolando Del Maestro; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2012)

Comparing two approaches to rigid registration of three-dimensional ultrasound and magnetic resonance images for neurosurgery. - Laurence Mercier; Vladimir S. Fonov; Claire Haegelen; Rolando Del Maestro; Kevin Petrecca; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2012)

Validation of automated ultrasound-CT registration of vertebrae. - Charles X. B. Yan; Benoît Goulet; Sean Jy-Shyang Chen; Donatella Tampieri; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2012)

Ultrasound-CT registration of vertebrae without reconstruction. - Charles X. B. Yan; Benoît Goulet; Donatella Tampieri; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2012)

A CANDLE for a deeper in vivo insight. - Pierrick Coupé; Martin Munz; José V. Manjón; Edward S. Ruthazer; D. Louis Collins (Medical Image Anal., 2012)

New methods for MRI denoising based on sparseness and self-similarity. - José V. Manjón; Pierrick Coupé; Antonio Buades; D. Louis Collins; Montserrat Robles (Medical Image Anal., 2012)

Simultaneous segmentation and grading of anatomical structures for patient's classification: Application to Alzheimer's disease. - Pierrick Coupé; Simon F. Eskildsen; José V. Manjón; Vladimir S. Fonov; D. Louis Collins (NeuroImage, 2012)

BEaST: Brain extraction based on nonlocal segmentation technique. - Simon F. Eskildsen; Pierrick Coupé; Vladimir S. Fonov; José V. Manjón; Kelvin K. Leung; Nicolas Guizard; Shafik N. Wassef; Lasse Riis Østergaard; D. Louis Collins (NeuroImage, 2012)

Brain templates and atlases. - Alan C. Evans; Andrew L. Janke; D. Louis Collins; Sylvain Baillet (NeuroImage, 2012)

Genetic influences on thinning of the cerebral cortex during development. - I. L. C. van Soelen; Rachel M. Brouwer; G. Caroline M. van Baal; Hugo G. Schnack; Jiska S. Peper; D. Louis Collins; Alan C. Evans; René S. Kahn; Dorret I. Boomsma; Hilleke E. Hulshoff Pol (NeuroImage, 2012)

Automatic Detection of Gadolinium-Enhancing Multiple Sclerosis Lesions in Brain MRI Using Conditional Random Fields. - Zahra Karimaghaloo; Mohak Shah; Simon J. Francis; Douglas L. Arnold; D. Louis Collins; Tal Arbel (IEEE Trans. Medical Imaging, 2012)

Multi-Modal Image Registration Based on Gradient Orientations of Minimal Uncertainty. - Dante De Nigris; D. Louis Collins; Tal Arbel (IEEE Trans. Medical Imaging, 2012)

DVV: A Taxonomy for Mixed Reality Visualization in Image Guided Surgery. - Marta Kersten-Oertel; Pierre Jannin; D. Louis Collins (IEEE Trans. Vis. Comput. Graph., 2012)

Cortical Surface Analysis of Multi-contrast MR Data to Improve Detection of Cortical Pathology in Multiple Sclerosis. - Marika Archambault-Wallenburg; Douglas L. Arnold; Sridar Narayanan; G. Bruce Pike; D. Louis Collins (MBIA, 2013)

Automatic Markov Random Field Segmentation of Susceptibility-Weighted MR Venography. - Silvain Bériault; Marika Archambault-Wallenburg; Abbas F. Sadikot; D. Louis Collins; G. Bruce Pike (CLIP, 2013)

Adaptive Voxel, Texture and Temporal Conditional Random Fields for Detection of Gad-Enhancing Multiple Sclerosis Lesions in Brain MRI. - Zahra Karimaghaloo; Hassan Rivaz; Douglas L. Arnold; D. Louis Collins; Tal Arbel (MICCAI (3), 2013)

Volume Visualization for Neurovascular Augmented Reality Surgery. - Marta Kersten-Oertel; Simon Drouin; Sean Jy-Shyang Chen; D. Louis Collins (AE-CAI, 2013)

Hierarchical Probabilistic Gabor and MRF Segmentation of Brain Tumours in MRI Volumes. - Nagesh K. Subbanna; Doina Precup; D. Louis Collins; Tal Arbel (MICCAI (1), 2013)

Automatic Optimization of Depth Electrode Trajectory Planning. - Rina Zelmann; Silvain Bériault; Kelvin Mok; Claire Haegelen; Jeffery A. Hall; G. Bruce Pike; Andre Olivier; D. Louis Collins (CLIP, 2013)

Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease. - Claire Haegelen; Pierrick Coupé; Vladimir S. Fonov; Nicolas Guizard; Pierre Jannin; Xavier Morandi; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2013)

Fast rigid registration of pre-operative magnetic resonance images to intra-operative ultrasound for neurosurgery based on high confidence gradient orientations. - Dante De Nigris; D. Louis Collins; Tal Arbel (Int. J. Comput. Assist. Radiol. Surg., 2013)

The state of the art of visualization in mixed reality image guided surgery. - Marta Kersten-Oertel; Pierre Jannin; D. Louis Collins (Comput. Medical Imaging Graph., 2013)

Multi-site study of surgical practice in neurosurgery based on surgical process models. - Germain Forestier; Florent Lalys; Laurent Riffaud; D. Louis Collins; Jürgen Meixensberger; Shafik N. Wassef; Thomas Neumuth; Benoît Goulet; Pierre Jannin (J. Biomed. Informatics, 2013)

Review of automatic segmentation methods of multiple sclerosis white matter lesions on conventional magnetic resonance imaging. - Daniel García-Lorenzo; Simon J. Francis; Sridar Narayanan; Douglas L. Arnold; D. Louis Collins (Medical Image Anal., 2013)

Evidence for a cerebral cortical thickness network anti-correlated with amygdalar volume in healthy youths: Implications for the neural substrates of emotion regulation. - Matthew D. Albaugh; Simon Ducharme; D. Louis Collins; Kelly N. Botteron; Robert R. Althoff; Alan C. Evans; Sherif Karama; James J. Hudziak (NeuroImage, 2013)

A new method for structural volume analysis of longitudinal brain MRI data and its application in studying the growth trajectories of anatomical brain structures in childhood. - Bérengère Aubert-Broche; Vladimir S. Fonov; Daniel García-Lorenzo; Abderazzak Mouiha; Nicolas Guizard; Pierrick Coupé; Simon F. Eskildsen; D. Louis Collins (NeuroImage, 2013)

Prediction of Alzheimer's disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning. - Simon F. Eskildsen; Pierrick Coupé; Daniel García-Lorenzo; Vladimir S. Fonov; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2013)

Volumetric analysis of medial temporal lobe structures in brain development from childhood to adolescence. - Shiyan Hu 003; Jens C. Pruessner; Pierrick Coupé; D. Louis Collins (NeuroImage, 2013)

Temporally Consistent Probabilistic Detection of New Multiple Sclerosis Lesions in Brain MRI. - Colm Elliott; Douglas L. Arnold; D. Louis Collins; Tal Arbel (IEEE Trans. Medical Imaging, 2013)

A Generative Model for Automatic Detection of Resolving Multiple Sclerosis Lesions. - Colm Elliott; Douglas L. Arnold; D. Louis Collins; Tal Arbel (BAMBI, 2014)

Is It Possible to Differentiate the Impact of Pediatric Monophasic Demyelinating Disorders and Multiple Sclerosis After a First Episode of Demyelination? - Bérengère Aubert-Broche; Vladimir S. Fonov; Katrin Weier; Sridar Narayanan; Douglas L. Arnold; Brenda Banwell; D. Louis Collins (STIA, 2014)

Augmented Reality in Neurovascular Surgery: First Experiences. - Marta Kersten-Oertel; Ian Gerard; Simon Drouin; Kelvin Mok; Denis Sirhan; David S. Sinclair; D. Louis Collins (AE-CAI, 2014)

Anatomically Constrained Weak Classifier Fusion for Early Detection of Alzheimer's Disease. - Mawulawoé Komlagan; Vinh-Thong Ta 002; Xingyu Pan; Jean-Philippe Domenger; D. Louis Collins; Pierrick Coupé (MLMI, 2014)

Simulation of Ultrasound Images for Validation of MR to Ultrasound Registration in Neurosurgery. - Hassan Rivaz; D. Louis Collins (AE-CAI, 2014)

Optimized PatchMatch for Near Real Time and Accurate Label Fusion. - Vinh-Thong Ta 002; Rémi Giraud; D. Louis Collins; Pierrick Coupé (MICCAI (3), 2014)

SymBA: Diffeomorphic Registration Based on Gradient Orientation Alignment and Boundary Proximity of Sparsely Selected Voxels. - Dante De Nigris; D. Louis Collins; Tal Arbel (WBIR, 2014)

Nonlocal Intracranial Cavity Extraction. - José V. Manjón; Simon F. Eskildsen; Pierrick Coupé; José E. Romero; D. Louis Collins; Montserrat Robles (Int. J. Biomed. Imaging, 2014)

Self-similarity weighted mutual information: A new nonrigid image registration metric. - Hassan Rivaz; Zahra Karimaghaloo; D. Louis Collins (Medical Image Anal., 2014)

Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template. - Vladimir S. Fonov; Arnaud Le Troter; Manuel Taso; Benjamin De Leener; G. Lévêque; M. Benhamou; Michaël Sdika; Habib Benali; Pierre-François Pradat; D. Louis Collins; Virginie Callot; Julien Cohen-Adad (NeuroImage, 2014)

Nonrigid Registration of Ultrasound and MRI Using Contextual Conditioned Mutual Information. - Hassan Rivaz; Zahra Karimaghaloo; Vladimir S. Fonov; D. Louis Collins (IEEE Trans. Medical Imaging, 2014)

An Evaluation of Depth Enhancing Perceptual Cues for Vascular Volume Visualization in Neurosurgery. - Marta Kersten-Oertel; Sean Jy-Shyang Chen; D. Louis Collins (IEEE Trans. Vis. Comput. Graph., 2014)

Interaction-Based Registration Correction for Improved Augmented Reality Overlay in Neurosurgery. - Simon Drouin; Marta Kersten-Oertel; D. Louis Collins (AE-CAI, 2015)

Improving Patient Specific Neurosurgical Models with Intraoperative Ultrasound and Augmented Reality Visualizations in a Neuronavigation Environment. - Ian J. Gerard; Marta Kersten-Oertel; Simon Drouin; Jeffery A. Hall; Kevin Petrecca; Dante De Nigris; Tal Arbel; D. Louis Collins (CLIP@MICCAI, 2015)

Augmented Reality for Specific Neurovascular Surgical Tasks. - Marta Kersten-Oertel; Ian J. Gerard; Simon Drouin; Kelvin Mok; Denis Sirhan; David S. Sinclair; D. Louis Collins (AE-CAI, 2015)

Atlas-Guided Transcranial Doppler Ultrasound Examination with a Neuro-Surgical Navigation System: Case Study. - Yiming Xiao; Ian J. Gerard; Vladimir S. Fonov; Dante De Nigris; Catherine Therrien; Bérengère Aubert-Broche; Simon Drouin; Anna Kochanowska; Donatella Tampieri; D. Louis Collins (CLIP@MICCAI, 2015)

Shape index distribution based local surface complexity applied to the human cortex. - Sun Hyung Kim; Vladimir S. Fonov; D. Louis Collins; Guido Gerig; Martin Andreas Styner (Image Processing, 2015)

An analysis of tracking error in image-guided neurosurgery. - Ian J. Gerard; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Augmented reality in neurovascular surgery: feasibility and first uses in the operating room. - Marta Kersten-Oertel; Ian Gerard; Simon Drouin; Kelvin Mok; Denis Sirhan; David S. Sinclair; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Deformable registration of preoperative MR, pre-resection ultrasound, and post-resection ultrasound images of neurosurgery. - Hassan Rivaz; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Information processing in computer-assisted interventions: 5th international conference, 2014. - Danail Stoyanov; D. Louis Collins; Ichiro Sakuma; Purang Abolmaesumi; Pierre Jannin (Int. J. Comput. Assist. Radiol. Surg., 2015)

Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson's disease. - Yiming Xiao; Vladimir S. Fonov; Silvain Bériault; Ian Gerard; Abbas F. Sadikot; G. Bruce Pike; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Multi-contrast unbiased MRI atlas of a Parkinson's disease population. - Yiming Xiao; Vladimir S. Fonov; Silvain Bériault; Fahd Al Subaie; M. Mallar Chakravarty; Abbas F. Sadikot; G. Bruce Pike; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Improving recorded volume in mesial temporal lobe by optimizing stereotactic intracranial electrode implantation planning. - Rina Zelmann; Silvain Bériault; Murilo M. Marinho; Kelvin Mok; Jeffery A. Hall; Nicolas Guizard; Claire Haegelen; Andre Olivier; G. Bruce Pike; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. - David M. Cash; Chris Frost 001; Leonardo O. Iheme; Devrim Ünay; Melek Kandemir; Jurgen Fripp; Olivier Salvado; Pierrick Bourgeat; Martin Reuter 001; Bruce Fischl; Marco Lorenzi; Giovanni B. Frisoni; et al. (NeuroImage, 2015)

Diurnal fluctuations in brain volume: Statistical analyses of MRI from large populations. - Kunio Nakamura; Robert A. Brown; Sridar Narayanan; D. Louis Collins; Douglas L. Arnold (NeuroImage, 2015)

Probabilistic Multiple Sclerosis Lesion Classification Based on Modeling Regional Intensity Variability and Local Neighborhood Information. - Rola Harmouche; Nagesh K. Subbanna; D. Louis Collins; Douglas L. Arnold; Tal Arbel (IEEE Trans. Biomed. Eng., 2015)

Automatic SWI Venography Segmentation Using Conditional Random Fields. - Silvain Bériault; Yiming Xiao; D. Louis Collins; G. Bruce Pike (IEEE Trans. Medical Imaging, 2015)

Temporal Hierarchical Adaptive Texture CRF for Automatic Detection of Gadolinium-Enhancing Multiple Sclerosis Lesions in Brain MRI. - Zahra Karimaghaloo; Hassan Rivaz; Douglas L. Arnold; D. Louis Collins; Tal Arbel (IEEE Trans. Medical Imaging, 2015)

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). - Bjoern H. Menze; András Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin S. Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth R. Gerstner; et al. (IEEE Trans. Medical Imaging, 2015)

Automatic Deformable MR-Ultrasound Registration for Image-Guided Neurosurgery. - Hassan Rivaz; Sean Jy-Shyang Chen; D. Louis Collins (IEEE Trans. Medical Imaging, 2015)

Towards Augmented Reality Guided Craniotomy Planning in Tumour Resections. - Marta Kersten-Oertel; Ian J. Gerard; Simon Drouin; Kevin Petrecca; Jeffery A. Hall; D. Louis Collins (MIAR, 2016)

Towards a Second Brain Images of Tumours for Evaluation (BITE2) Database. - Ian J. Gerard; C. Couturier; Marta Kersten-Oertel; Simon Drouin; Dante De Nigris; Jeffery A. Hall; Kelvin Mok; Kevin Petrecca; Tal Arbel; D. Louis Collins (BrainLes@MICCAI, 2016)

User-friendly freehand ultrasound calibration using Lego bricks and automatic registration. - Yiming Xiao; Charles X. B. Yan; Simon Drouin; Dante De Nigris; Anna Kochanowska; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2016)

Cyberinfrastructure for Open Science at the Montreal Neurological Institute. - Samir Das; Tristan Glatard; Christine Rogers; John Saigle; Santiago Paiva; Leigh C. MacIntyre; Mouna Safi-Harb; Marc-Etienne Rousseau; Jordan Stirling; Najmeh Khalili-Mahani; Dave MacFarlane; Penelope Kostopoulos; et al. (Frontiers Neuroinformatics, 2016)

MINC 2.0: A Flexible Format for Multi-Modal Images. - Robert D. Vincent; Peter Neelin; Najmeh Khalili-Mahani; Andrew L. Janke; Vladimir S. Fonov; Steven M. Robbins; Leila Baghdadi; Jason P. Lerch; John G. Sled; Reza Adalat; David MacDonald; Alex P. Zijdenbos; et al. (Frontiers Neuroinformatics, 2016)

An Optimized PatchMatch for multi-scale and multi-feature label fusion. - Rémi Giraud; Vinh-Thong Ta 002; Nicolas Papadakis; José V. Manjón; D. Louis Collins; Pierrick Coupé (NeuroImage, 2016)

Development of cortical shape in the human brain from 6 to 24 months of age via a novel measure of shape complexity. - Sun Hyung Kim; Ilwoo Lyu; Vladimir S. Fonov; Clement Vachet; Heather Cody Hazlett; Rachel Gimpel Smith; Joseph Piven; Stephen Dager; Robert C. McKinstry; John R. Pruett Jr.; Alan C. Evans; D. Louis Collins; et al. (NeuroImage, 2016)

Towards Automatic Collateral Circulation Score Evaluation in Ischemic Stroke Using Image Decompositions and Support Vector Machines. - Yiming Xiao; Ali Alamer; Vladimir S. Fonov; Benjamin W. Y. Lo; Donatella Tampieri; D. Louis Collins; Hassan Rivaz; Marta Kersten-Oertel (CMMI/RAMBO/SWITCH@MICCAI, 2017)

IBIS: an OR ready open-source platform for image-guided neurosurgery. - Simon Drouin; Anna Kochanowska; Marta Kersten-Oertel; Ian J. Gerard; Rina Zelmann; Dante De Nigris; Silvain Bériault; Tal Arbel; Denis Sirhan; Abbas F. Sadikot; Jeffery A. Hall; David S. Sinclair; et al. (Int. J. Comput. Assist. Radiol. Surg., 2017)

Brain shift in neuronavigation of brain tumors: A review. - Ian J. Gerard; Marta Kersten-Oertel; Kevin Petrecca; Denis Sirhan; Jeffery A. Hall; D. Louis Collins (Medical Image Anal., 2017)

Performance comparison of 10 different classification techniques in segmenting white matter hyperintensities in aging. - Mahsa Dadar; Josefina Maranzano; Karen Misquitta; Cassandra J. Anor; Vladimir S. Fonov; Maria Carmela Tartaglia; Owen T. Carmichael; Charles DeCarli; D. Louis Collins; Alzheimer's Disease Neuroimaging Initiative (NeuroImage, 2017)

SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. - Benjamin De Leener; Simon Lévy; Sara M. Dupont; Vladimir S. Fonov; Nikola Stikov; D. Louis Collins; Virginie Callot; Julien Cohen-Adad (NeuroImage, 2017)

A comparison of accurate automatic hippocampal segmentation methods. - Azar Zandifar; Vladimir S. Fonov; Pierrick Coupé; Jens C. Pruessner; D. Louis Collins (NeuroImage, 2017)

Validation of a Regression Technique for Segmentation of White Matter Hyperintensities in Alzheimer's Disease. - Mahsa Dadar; Tharick A. Pascoal; Sarinporn Manitsirikul; Karen Misquitta; Vladimir S. Fonov; Maria Carmela Tartaglia; John Breitner; Pedro Rosa-Neto; Owen T. Carmichael; Charles DeCarli; D. Louis Collins (IEEE Trans. Medical Imaging, 2017)

Fast Registration of CT with Intra-operative Ultrasound Images for Spine Surgery. - Houssemeddine Guedri; D. Louis Collins (CSI@MICCAI, 2018)

A novel framework for the local extraction of extra-axial cerebrospinal fluid from MR brain images. - Mahmoud Mostapha; Mark D. Shen; Sun Hyung Kim; Meghan R. Swanson; D. Louis Collins; Vladimir S. Fonov; Guido Gerig; Joseph Piven; Martin A. Styner (Image Processing, 2018)

Guest editorial for the IJCARS special issue on MICCAI 2017. - Maxime Descoteaux; Lena Maier-Hein; Alfred M. Franz; Pierre Jannin; D. Louis Collins; Simon Duchesne (Int. J. Comput. Assist. Radiol. Surg., 2018)

Special Issue on MICCAI 2017. - Maxime Descoteaux; Lena Maier-Hein; Alfred M. Franz; Pierre Jannin; D. Louis Collins; Simon Duchesne (Medical Image Anal., 2018)

An augmented-reality system prototype for guiding transcranial Doppler ultrasound examination. - Yiming Xiao; Simon Drouin; Ian J. Gerard; Vladimir S. Fonov; Bérengère Aubert-Broche; Yuhan Ma; Marta Kersten-Oertel; Donatella Tampieri; D. Louis Collins (Multim. Tools Appl., 2018)

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. - Aaron Carass; Jennifer L. Cuzzocreo; Shuo Han 001; Carlos R. Hernandez-Castillo; Paul E. Rasser; Melanie Ganz; Vincent Beliveau; Jose Dolz; Ismail Ben Ayed; Christian Desrosiers; Benjamin Thyreau; José E. Romero; et al. (NeuroImage, 2018)

A comparison of publicly available linear MRI stereotaxic registration techniques. - Mahsa Dadar; Vladimir S. Fonov; D. Louis Collins; Alzheimer's Disease Neuroimaging Initiative (NeuroImage, 2018)

Toward defining deep brain stimulation targets in MNI space: A subcortical atlas based on multimodal MRI, histology and structural connectivity. - Siobhan Ewert; Philip Plettig; Ningfei Li; M. Mallar Chakravarty; D. Louis Collins; Todd M. Herrington; Andrea A. Kühn; Andreas Horn (NeuroImage, 2018)

PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. - Benjamin De Leener; Vladimir S. Fonov; D. Louis Collins; Virginie Callot; Nikola Stikov; Julien Cohen-Adad (NeuroImage, 2018)

The EADC-ADNI harmonized protocol for hippocampal segmentation: A validation study. - Azar Zandifar; Vladimir S. Fonov; Jens C. Pruessner; D. Louis Collins; Alzheimer's Disease Neuroimaging Initiative (NeuroImage, 2018)

Assessment of Cognitive Load in the Context of Neurosurgery. - Daniel Di Giovanni; Simon Drouin; Marta Kersten-Oertel; D. Louis Collins (CogSci, 2019)

Early Prediction of Alzheimer's Disease Progression Using Variational Autoencoders. - Sumana Basu; Konrad Wagstyl; Azar Zandifar; D. Louis Collins; Adriana Romero; Doina Precup (MICCAI (4), 2019)

Toward real-time rigid registration of intra-operative ultrasound with preoperative CT images for lumbar spinal fusion surgery. - Houssem-Eddine Gueziri; Simon Drouin; Charles X. B. Yan; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2019)

Cognitive load associations when utilizing auditory display within image-guided neurosurgery. - Joseph Plazak; Daniel A. DiGiovanni; D. Louis Collins; Marta Kersten-Oertel (Int. J. Comput. Assist. Radiol. Surg., 2019)

An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion. - Rémi Giraud; Vinh-Thong Ta 002; Nicolas Papadakis; José V. Manjón; D. Louis Collins; Pierrick Coupé; Alzheimer's Disease Neuroimaging Initiative (CoRR, 2019)

Cortical and subcortical T1 white/gray contrast, chronological age, and cognitive performance. - John D. Lewis; Vladimir S. Fonov; D. Louis Collins; Alan C. Evans; Jussi Tohka (NeuroImage, 2019)

Predictive model of spread of Parkinson's pathology using network diffusion. - Sneha Pandya; Yashar Zeighami; Benjamin Freeze; Mahsa Dadar; D. Louis Collins; Alain Dagher; Ashish Raj (NeuroImage, 2019)

The hippocampal-to-ventricle ratio (HVR): Presentation of a manual segmentation protocol and preliminary evidence. - Dorothee Schoemaker; Claudia Buss; Sandra Pietrantonio; Larah Maunder; Silka Dawn Freiesleben; Johanna Hartmann; D. Louis Collins; Sonia J. Lupien; Jens C. Pruessner (NeuroImage, 2019)

A clinical-anatomical signature of Parkinson's disease identified with partial least squares and magnetic resonance imaging. - Yashar Zeighami; Seyed-Mohammad Fereshtehnejad; Mahsa Dadar; D. Louis Collins; Ronald B. Postuma; Bratislav Misic; Alain Dagher (NeuroImage, 2019)

Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge. - Hugo J. Kuijf; Adrià Casamitjana; D. Louis Collins; Mahsa Dadar; Achilleas Georgiou; Mohsen Ghafoorian; Dakai Jin; April Khademi; Jesse Knight; Hongwei Li 004; Xavier Lladó; J. Matthijs Biesbroek; et al. (IEEE Trans. Medical Imaging, 2019)

MARIN: an open-source mobile augmented reality interactive neuronavigation system. - Étienne Léger; Jonatan Reyes; Simon Drouin; Tiberiu Popa; Jeffery A. Hall; D. Louis Collins; Marta Kersten-Oertel (Int. J. Comput. Assist. Radiol. Surg., 2020)

Automatic extraction of vertebral landmarks from ultrasound images: A pilot study. - Arnaud Brignol; Houssem-Eddine Gueziri; Farida Cheriet; D. Louis Collins; Catherine Laporte (Comput. Biol. Medicine, 2020)

The state-of-the-art in ultrasound-guided spine interventions. - Houssem-Eddine Gueziri; Carlo Santaguida; D. Louis Collins (Medical Image Anal., 2020)

Automated separation of diffusely abnormal white matter from focal white matter lesions on MRI in multiple sclerosis. - Josefina Maranzano; Mahsa Dadar; Maryna Zhernovaia; Douglas L. Arnold; D. Louis Collins; Sridar Narayanan (NeuroImage, 2020)

Neuroanatomical changes in white and grey matter after sleeve gastrectomy. - Andréanne Michaud; Mahsa Dadar; Mélissa Pelletier; Yashar Zeighami; Isabel Garcia-Garcia; Sylvain Iceta; Yvonne Yau; Mélanie Nadeau; Simon Marceau; Laurent Biertho; André Tchernof; D. Louis Collins; et al. (NeuroImage, 2020)

Brain volume loss in individuals over time: Source of variance and limits of detectability. - Sridar Narayanan; Kunio Nakamura; Vladimir S. Fonov; Josefina Maranzano; Zografos Caramanos; Paul S. Giacomini; D. Louis Collins; Douglas L. Arnold (NeuroImage, 2020)

Interaction Driven Enhancement of Depth Perception in Angiographic Volumes. - Simon Drouin; Daniel Di Giovanni; Marta Kersten-Oertel; D. Louis Collins (IEEE Trans. Vis. Comput. Graph., 2020)

3D MRI Brain Tumour Segmentation with Autoencoder Regularization and Hausdorff Distance Loss Function. - Vladimir S. Fonov; Pedro Rosa-Neto; D. Louis Collins (BrainLes@MICCAI (1), 2021)

Evaluation of Low-Cost Hardware Alternatives for 3D Freehand Ultrasound Reconstruction in Image-Guided Neurosurgery. - Étienne Léger; Houssem-Eddine Gueziri; D. Louis Collins; Tiberiu Popa; Marta Kersten-Oertel (ASMUS@MICCAI, 2021)

Fast Tractography Streamline Search. - Etienne St-Onge; Eleftherios Garyfallidis; D. Louis Collins (CDMRI@MICCAI, 2021)

Spine and Individual Vertebrae Segmentation in Computed Tomography Images Using Geometric Flows and Shape Priors. - Pulkit Khandelwal; D. Louis Collins; Kaleem Siddiqi (Frontiers Comput. Sci., 2021)

Estimating medical image registration error and confidence: A taxonomy and scoping review. - Joshua Bierbrier; Houssem-Eddine Gueziri; D. Louis Collins (Medical Image Anal., 2022)

DARQ: Deep learning of quality control for stereotaxic registration of human brain MRI to the T1w MNI-ICBM 152 template. - Vladimir S. Fonov; Mahsa Dadar; D. Louis Collins (NeuroImage, 2022)

Fast Streamline Search: An Exact Technique for Diffusion MRI Tractography. - Etienne St-Onge; Eleftherios Garyfallidis; D. Louis Collins (Neuroinformatics, 2022)

Hessian-Based Similarity Metric for Multimodal Medical Image Registration. - Mohammadreza Eskandari; Houssem-Eddine Gueziri; D. Louis Collins (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

An Evaluation of Low-Cost Hardware on 3D Ultrasound Reconstruction Accuracy. - Étienne Léger; Niki Najafi; Houssem-Eddine Gueziri; D. Louis Collins; Marta Kersten-Oertel (ASMUS@MICCAI, 2024)