Computation challenges in complex liquids: Entropy-driven phase transitions. - Daan Frenkel (Future Gener. Comput. Syst., 1994)

Mesoscopic lattice modeling of electrokinetic phenomena. - Ignacio Pagonabarraga; Fabrizio Capuani; Daan Frenkel (Comput. Phys. Commun., 2005)

Nucleation in suspensions of anisotropic colloids. - Tanja Schilling; Daan Frenkel (Comput. Phys. Commun., 2005)

Disordered Flanks Prevent Peptide Aggregation. - Sanne Abeln; Daan Frenkel (PLoS Comput. Biol., 2008)

Multi-Scale Simulations Provide Supporting Evidence for the Hypothesis of Intramolecular Protein Translocation in GroEL/GroES Complexes. - Ivan Coluzza; Alfonso De Simone; Franca Fraternali; Daan Frenkel (PLoS Comput. Biol., 2008)

Error analysis and correction for Lattice Boltzmann simulated flow conductance in capillaries of different shapes and alignments. - Ankush Sengupta; Paul S. Hammond; Daan Frenkel; Edo S. Boek (J. Comput. Phys., 2012)

Connecting Macroscopic Observables and Microscopic Assembly Events in Amyloid Formation Using Coarse Grained Simulations. - Noah S. Bieler; Tuomas P. J. Knowles; Daan Frenkel; Robert Vácha (PLoS Comput. Biol., 2012)

Oligomers of Heat-Shock Proteins: Structures That Don't Imply Function. - William M. Jacobs; Tuomas P. J. Knowles; Daan Frenkel (PLoS Comput. Biol., 2016)