Determination of minimum sample size and discriminatory expression patterns in microarray data. - Daehee Hwang; William A. Schmitt; George Stephanopoulos; Gregory Stephanopoulos (Bioinform., 2002)

Mapping physiological states from microarray expression measurements. - Gregory Stephanopoulos; Daehee Hwang; William A. Schmitt; Jatin Misra; George Stephanopoulos (Bioinform., 2002)

Inverse modeling using multi-block PLS to determine the environmental conditions that provide optimal cellular function. - Daehee Hwang; George Stephanopoulos; Christina Chan (Bioinform., 2004)

Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data. - Kyongbum Lee; Daehee Hwang; Tadaaki Yokoyama; George Stephanopoulos; Gregory Stephanopoulos; Martin L. Yarmush (Bioinform., 2004)

MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis. - Daehee Hwang; Ning Zhang; Hookeun Lee; Eugene Yi; Hui Zhang; Inyoul Y. Lee; Leroy Hood; Ruedi Aebersold (Bioinform., 2008)

The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases. - Nils Gehlenborg; Daehee Hwang; Inyoul Y. Lee; Hyuntae Yoo; David Baxter; Brianne Petritis; Rose Pitstick; Bruz Marzolf; Stephen J. DeArmond; George Carlson; Leroy Hood (Database J. Biol. Databases Curation, 2009)

Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data. - Nils Gehlenborg; Wei Yan; Inyoul Y. Lee; Hyuntae Yoo; Kay Nieselt; Daehee Hwang; Ruedi Aebersold; Leroy Hood (Bioinform., 2009)

Principal network analysis: identification of subnetworks representing major dynamics using gene expression data. - Yongsoo Kim; Taek-Kyun Kim; Yungu Kim; Jiho Yoo; Sungyong You; Inyoul Y. Lee; George Carlson; Leroy Hood; Seungjin Choi; Daehee Hwang (Bioinform., 2011)

Inference of dynamic networks using time-course data. - Yongsoo Kim; Seungmin Han; Seungjin Choi; Daehee Hwang (Briefings Bioinform., 2014)

TEMPI: probabilistic modeling time-evolving differential PPI networks with multiPle information. - Yongsoo Kim; Jin-Hyeok Jang; Seungjin Choi; Daehee Hwang (Bioinform., 2014)

Comprehensive data resources and analytical tools for pathological association of aminoacyl tRNA synthetases with cancer. - Ji-Hyun Lee; Sungyong You; Do Young Hyeon; Byeongsoo Kang; Hyerim Kim; Kyoung Mii Park; Byungwoo Han; Daehee Hwang; Sunghoon Kim 001 (Database J. Biol. Databases Curation, 2015)

HepatoToxicity Portal (HTP): an integrated database of drug-induced hepatotoxicity knowledgebase and graph neural network-based prediction model. - Jiyeon Han; Wonho Zhung; Insoo Jang; Joongwon Lee; Min Ji Kang; Timothy Dain Lee; Seung Jun Kwack; Kyu-Bong Kim; Daehee Hwang; Byungwook Lee; Hyung Sik Kim; Woo Youn Kim; et al. (J. Cheminformatics, 2025)