Modelling the evolution of transcriptional control networks using stochastic simulations and evolutionary computational methods. - Dafyd J. Jenkins; Dov J. Stekel (BMC Syst. Biol., 2007)

Effects of Signalling on the Evolution of Gene Regulatory Networks. - Dafyd J. Jenkins; Dov J. Stekel (ALIFE, 2008)

Strong negative self regulation of Prokaryotic transcription factors increases the intrinsic noise of protein expression. - Dov J. Stekel; Dafyd J. Jenkins (BMC Syst. Biol., 2008)

A New Model for Investigating the Evolution of Transcription Control Networks. - Dafyd J. Jenkins; Dov J. Stekel (Artif. Life, 2009)

A temporal switch model for estimating transcriptional activity in gene expression. - Dafyd J. Jenkins; Bärbel Finkenstädt; David A. Rand (Bioinform., 2013)

Wigwams: identifying gene modules co-regulated across multiple biological conditions. - Krzysztof Polanski; Johanna Rhodes; Claire Hill; Peijun Zhang; Dafyd J. Jenkins; Steven J. Kiddle; Aleksey Jironkin; Jim Beynon; Vicky Buchanan-Wollaston; Sascha Ott; Katherine J. Denby (Bioinform., 2014)

Inferring transcriptional logic from multiple dynamic experiments. - Giorgos Minas; Dafyd J. Jenkins; David A. Rand; Bärbel Finkenstädt (Bioinform., 2017)

ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data. - Giorgos Minas; Hiroshi Momiji; Dafyd J. Jenkins; Maria J. Costa; David A. Rand; Bärbel Finkenstädt (BMC Bioinform., 2017)