RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database. - Dag Harmsen; Jörg Rothgänger; Matthias Frosch; Jürgen Albert (Nucleic Acids Res., 2002)

Digital extractor: analysis of digital differential display output. - Michael Sammeth; Jörg Rothgänger; W. Esser; Jürgen Albert; Jens Stoye; Dag Harmsen (Bioinform., 2003)

Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). - Michael Sammeth; Thomas Weniger; Dag Harmsen; Jens Stoye (WABI, 2005)

Ridom TraceEdit: a DNA trace editor and viewer. - Jörg Rothgänger; Markus Weniger; Thomas Weniger; Alexander Mellmann; Dag Harmsen (Bioinform., 2006)

MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria. - Thomas Weniger; Justina Krawczyk; Philip Supply; Stefan Niemann; Dag Harmsen (Nucleic Acids Res., 2010)