The Mechanistic Basis of Compartmentalized Gene Expression in Bacillus subtilis. - Dagmar Iber (Nat. Comput., 2005)

Reduction of a detailed biological signaling model. - Dagmar Iber (ICCS, 2010)

Inferring Biological Mechanisms by Data-Based Mathematical Modelling: Compartment-Specific Gene Activation during Sporulation in Bacillus subtilis as a Test Case. - Dagmar Iber (Adv. Bioinformatics, 2011)

The plasticity of TGF-β signaling. - Geraldine Cellière; Georgios Fengos; Marianne Hervé; Dagmar Iber (BMC Syst. Biol., 2011)

ECCB 2012: The 11th European Conference on Computational Biology. - Torsten Schwede; Dagmar Iber (Bioinform., 2012)

Branch Mode Selection during Early Lung Development. - Denis Menshykau; Conradin Kraemer; Dagmar Iber (PLoS Comput. Biol., 2012)

Dynamic Image-Based Modelling of Kidney Branching Morphogenesis. - Srivathsan Adivarahan; Denis Menshykau; Odyssé Michos; Dagmar Iber (CMSB, 2013)

Computational modelling of bovine ovarian follicle development. - Dagmar Iber; Christian Geyter (BMC Syst. Biol., 2013)

Simulating Organogenesis in COMSOL: Image-based Modeling. - Zahra Karimaddini; Erkan Unal; Denis Menshykau; Dagmar Iber (CoRR, 2014)

LBIBCell: a cell-based simulation environment for morphogenetic problems. - Simon Tanaka; David Sichau; Dagmar Iber (Bioinform., 2015)

Simulating Organogenesis: Algorithms for the Image-Based Determination of Displacement Fields. - Clemens Arthur Schwaninger; Denis Menshykau; Dagmar Iber (ACM Trans. Model. Comput. Simul., 2015)

Image-based modelling of organogenesis. - Dagmar Iber; Zahra Karimaddini; Erkan Ünal (Briefings Bioinform., 2016)

MOCCASIN: converting MATLAB ODE models to SBML. - Harold F. Gómez; Michael Hucka; Sarah M. Keating; German Nudelman; Dagmar Iber; Stuart C. Sealfon (Bioinform., 2016)

Simulating Organogenesis in COMSOL: Phase-Field Based Simulations of Embryonic Lung Branching Morphogenesis. - Lucas Daniel Wittwer; Roberto Croce; Sebastian Aland; Dagmar Iber (CoRR, 2016)

A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development. - Patrick Fried; Máximo Sánchez-Aragón; Daniel Aguilar-Hidalgo; Birgitta Lehtinen; Fernando Casares; Dagmar Iber (PLoS Comput. Biol., 2016)

PolyHoop: Soft particle and tissue dynamics with topological transitions. - Roman Vetter; Steve Runser; Dagmar Iber (Comput. Phys. Commun., 2024)

SimuCell3D: three-dimensional simulation of tissue mechanics with cell polarization. - Steve Runser; Roman Vetter; Dagmar Iber (Nat. Comput. Sci., 2024)

Publisher Correction: SimuCell3D: three-dimensional simulation of tissue mechanics with cell polarization. - Steve Runser; Roman Vetter; Dagmar Iber (Nat. Comput. Sci., 2024)

PINNverse: Accurate parameter estimation in differential equations from noisy data with constrained physics-informed neural networks. - Marius Almanstötter; Roman Vetter; Dagmar Iber (CoRR, 2025)