The MALACH Corpus: Results with End-to-End Architectures and Pretraining. - Michael Picheny; Qin Yang; Daiheng Zhang; Lining Zhang (INTERSPEECH, 2023)

Rectified Flow For Structure Based Drug Design. - Daiheng Zhang; Chengyue Gong; Qiang Liu 001 (CoRR, 2024)

Leveraging Multimodal Protein Representations to Predict Protein Melting Temperatures. - Daiheng Zhang; Yan Zeng; Xinyu Hong; Jinbo Xu (CoRR, 2024)

Elucidating the Design Space of Multimodal Protein Language Models. - Cheng-Yen Hsieh; Xinyou Wang; Daiheng Zhang; Dongyu Xue; Fei Ye; Shujian Huang; Zaixiang Zheng; Quanquan Gu (CoRR, 2025)

MolFORM: Multi-modal Flow Matching for Structure-Based Drug Design. - Jie Huang; Daiheng Zhang (CoRR, 2025)