Inferring a Graph from Path Frequency. - Tatsuya Akutsu; Daiji Fukagawa (CPM, 2005)

Performance analysis of a greedy algorithm for inferring Boolean functions. - Daiji Fukagawa; Tatsuya Akutsu (Inf. Process. Lett., 2005)

Fast Algorithms for Comparison of Similar Unordered Trees. - Daiji Fukagawa; Tatsuya Akutsu (Int. J. Found. Comput. Sci., 2006)

Inferring a Chemical Structure from a Feature Vector Based on Frequency of Labeled Paths and Small Fragments. - Tatsuya Akutsu; Daiji Fukagawa (APBC, 2007)

Statistical Learning Algorithm for Tree Similarity. - Atsuhiro Takasu; Daiji Fukagawa; Tatsuya Akutsu (ICDM, 2007)

Improved approximation of the largest common subtree of two unordered trees of bounded height. - Tatsuya Akutsu; Daiji Fukagawa; Atsuhiro Takasu (Inf. Process. Lett., 2008)

Maximal metric margin partitioning for similarity search indexes. - Hisashi Kurasawa; Daiji Fukagawa; Atsuhiro Takasu; Jun Adachi (CIKM, 2009)

Dynamic hyperparameter optimization for bayesian topical trend analysis. - Tomonari Masada; Daiji Fukagawa; Atsuhiro Takasu; Tsuyoshi Hamada; Yuichiro Shibata; Kiyoshi Oguri (CIKM, 2009)

Latent Topic Extraction from Relational Table for Record Matching. - Atsuhiro Takasu; Daiji Fukagawa; Tatsuya Akutsu (Discovery Science, 2009)

Constant Factor Approximation of Edit Distance of Bounded Height Unordered Trees. - Daiji Fukagawa; Tatsuya Akutsu; Atsuhiro Takasu (SPIRE, 2009)

Pivot Selection Method for Optimizing both Pruning and Balancing in Metric Space Indexes. - Hisashi Kurasawa; Daiji Fukagawa; Atsuhiro Takasu; Jun Adachi (DEXA (2), 2010)

A Variational Bayesian EM Algorithm for Tree Similarity. - Atsuhiro Takasu; Daiji Fukagawa; Tatsuya Akutsu (ICPR, 2010)

Modeling Topical Trends over Continuous Time with Priors. - Tomonari Masada; Daiji Fukagawa; Atsuhiro Takasu; Yuichiro Shibata; Kiyoshi Oguri (ISNN (2), 2010)

Approximating Tree Edit Distance through String Edit Distance. - Tatsuya Akutsu; Daiji Fukagawa; Atsuhiro Takasu (Algorithmica, 2010)

Margin-Based Pivot Selection for Similarity Search Indexes. - Hisashi Kurasawa; Daiji Fukagawa; Atsuhiro Takasu; Jun Adachi (IEICE Trans. Inf. Syst., 2010)

An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures. - Tatsuya Akutsu; Tomoya Mori; Takeyuki Tamura; Daiji Fukagawa; Atsuhiro Takasu; Etsuji Tomita (CISIS, 2011)

A clique-based method for the edit distance between unordered trees and its application to analysis of glycan structures. - Daiji Fukagawa; Takeyuki Tamura; Atsuhiro Takasu; Etsuji Tomita; Tatsuya Akutsu (BMC Bioinform., 2011)

Optimal Pivot Selection Method Based on the Partition and the Pruning Effect for Metric Space Indexes. - Hisashi Kurasawa; Daiji Fukagawa; Atsuhiro Takasu; Jun Adachi (IEICE Trans. Inf. Syst., 2011)

Exact algorithms for computing the tree edit distance between unordered trees. - Tatsuya Akutsu; Daiji Fukagawa; Atsuhiro Takasu; Takeyuki Tamura (Theor. Comput. Sci., 2011)

Inferring a graph from path frequency. - Tatsuya Akutsu; Daiji Fukagawa; Jesper Jansson 001; Kunihiko Sadakane (Discret. Appl. Math., 2012)

A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees. - Tomoya Mori; Takeyuki Tamura; Daiji Fukagawa; Atsuhiro Takasu; Etsuji Tomita; Tatsuya Akutsu (J. Comput. Biol., 2012)

Approximation and parameterized algorithms for common subtrees and edit distance between unordered trees. - Tatsuya Akutsu; Daiji Fukagawa; Magnús M. Halldórsson; Atsuhiro Takasu; Keisuke Tanaka (Theor. Comput. Sci., 2013)

Efficient exponential-time algorithms for edit distance between unordered trees. - Tatsuya Akutsu; Takeyuki Tamura; Daiji Fukagawa; Atsuhiro Takasu (J. Discrete Algorithms, 2014)