Re-Identification Based Automatic Matching and Annotation of Chromosome. - Chengyu Wang 005; Daiyun Huang; Jingwei Guo 001; Jionglong Su; Fei Ma 002; Limin Yu (CISP-BMEI, 2019)

Prediction of m6A Reader Substrate Sites Using Deep Convolutional and Recurrent Neural Network. - Yuxuan Wu; Yuxin Zhang; Ruoqi Wang; Jia Meng 001; Kunqi Chen; Yiyou Song; Daiyun Huang (BIBE, 2021)

A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image. - Sifan Song; Daiyun Huang; Yalun Hu; Chunxiao Yang; Jia Meng 001; Fei Ma 002; Frans Coenen; Jiaming Zhang 005; Jionglong Su (CISP-BMEI, 2021)

Weakly supervised learning of RNA modifications from low-resolution epitranscriptome data. - Daiyun Huang; Bowen Song; Jingjue Wei; Jionglong Su; Frans Coenen; Jia Meng 001 (Bioinform., 2021)

A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image. - Sifan Song; Daiyun Huang; Yalun Hu; Chunxiao Yang; Jia Meng 001; Fei Ma 002; Jiaming Zhang 005; Jionglong Su (CoRR, 2021)

m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome. - Jiongming Ma; Bowen Song; Zhen Wei; Daiyun Huang; Yuxin Zhang; Jionglong Su; João Pedro de Magalhães; Daniel J. Rigden; Jia Meng 001; Kunqi Chen (Nucleic Acids Res., 2022)

Deep learning-based RNA modification prediction method development. - Daiyun Huang (2022)

RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication. - Bowen Song; Xuan Wang; Zhanmin Liang; Jiongming Ma; Daiyun Huang; Yue Wang 060; João Pedro de Magalhães; Daniel J. Rigden; Jia Meng 001; Gang Liu; Kunqi Chen; Zhen Wei (Nucleic Acids Res., 2023)

Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes. - Yiyou Song; Yue Wang 060; Xuan Wang; Daiyun Huang; Anh Nguyen; Jia Meng 001 (Briefings Bioinform., 2023)

m6A-TSHub: Unveiling the Context-specific m6A Methylation and m6A-affecting Mutations in 23 Human Tissues. - Bowen Song; Daiyun Huang; Yuxin Zhang; Zhen Wei; Jionglong Su; João Pedro de Magalhães; Daniel J. Rigden; Jia Meng 001; Kunqi Chen (Genom. Proteom. Bioinform., 2023)

MTSwitch: A Web-based System for Translation between Molecules and Texts. - Nijia Han; Zimu Wang; Yuqi Wang; Haiyang Zhang 004; Daiyun Huang; Wei Wang 042 (INLG (System Demonstrations), 2024)

Multimodal zero-shot learning of previously unseen epitranscriptomes from RNA-seq data. - Yiyou Song; Bowen Song; Daiyun Huang; Anh Nguyen; Lihong Hu; Jia Meng 001; Yue Wang 060 (Briefings Bioinform., 2025)

Paradigms, innovations, and biological applications of RNA velocity: a comprehensive review. - Yajunzi Wang; Jing Li; Haoruo Zha; Shuhe Liu; Daiyun Huang; Lei Fu; Xin Liu (Briefings Bioinform., 2025)