A Case Study of Genome Evolution: From Continuous to Discrete Time Model. - Jerzy Tiuryn; Ryszard Rudnicki; Damian Wójtowicz (MFCS, 2004)

Almost FPRAS for Lattice Models of Protein Folding. - Anna Gambin; Damian Wójtowicz (WEA, 2005)

On Genome Evolution with Innovation. - Damian Wójtowicz; Jerzy Tiuryn (MFCS, 2006)

On Genome Evolution with Accumulated Change and Innovation. - Damian Wójtowicz; Jerzy Tiuryn (Comparative Genomics, 2006)

Evolution of Gene Families Based on Gene Duplication, Loss, Accumulated Change, and Innovation. - Damian Wójtowicz; Jerzy Tiuryn (J. Comput. Biol., 2007)

Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression. - Raheleh Salari; Damian Wójtowicz; Jie Zheng 002; David Levens; Yitzhak Pilpel; Teresa M. Przytycka (PLoS Comput. Biol., 2012)

Modeling cell heterogeneity: from single-cell variations to mixed cells populations. - Eric Batchelor; Maricel G. Kann; Teresa M. Przytycka; Benjamin J. Raphael; Damian Wójtowicz (Pacific Symposium on Biocomputing, 2013)

Ups and Downs of Poised RNA Polymerase II in B-Cells. - Phuong Dao; Damian Wójtowicz; Steevenson Nelson; David Levens; Teresa M. Przytycka (PLoS Comput. Biol., 2016)

BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions. - Phuong Dao; Yoo-Ah Kim; Damian Wójtowicz; Sanna Madan; Roded Sharan; Teresa M. Przytycka (PLoS Comput. Biol., 2017)

Detecting presence of mutational signatures in cancer with confidence. - Xiaoqing Huang; Damian Wójtowicz; Teresa M. Przytycka (Bioinform., 2018)

A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer. - Itay Sason; Damian Wójtowicz; Welles Robinson; Mark D. M. Leiserson; Teresa M. Przytycka; Roded Sharan (RECOMB, 2019)

DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to MutationalSignatures. - Damian Wójtowicz; Mark D. M. Leiserson; Roded Sharan; Teresa M. Przytycka (PSB, 2020)