LiSiCA: A Software for Ligand-Based Virtual Screening and Its Application for the Discovery of Butyrylcholinesterase Inhibitors. - Samo Lesnik; Tanja Stular; Boris Brus; Damijan Knez; Stanislav Gobec; Dusanka Janezic; Janez Konc (J. Chem. Inf. Model., 2015)

WIDOCK: a reactive docking protocol for virtual screening of covalent inhibitors. - Andrea Scarpino; László Petri; Damijan Knez; Tímea Imre; Péter Ábrányi-Balogh; György G. Ferenczy; Stanislav Gobec; György M. Keserü (J. Comput. Aided Mol. Des., 2021)

ProBiS-Dock: A Hybrid Multitemplate Homology Flexible Docking Algorithm Enabled by Protein Binding Site Comparison. - Janez Konc; Samo Lesnik; Blaz Skrlj; Matej Sova; Matic Proj; Damijan Knez; Stanislav Gobec; Dusanka Janezic (J. Chem. Inf. Model., 2022)