Analysis of the Convergency of Topology Preserving Neural Networks on Learning. - Daming Zhu; Shaohan Ma; Hongze Qiu (ISAAC, 1994)

Hardness and Methods to Solve CLIQUE. - Daming Zhu; Junfeng Luan; Shaohan Ma (J. Comput. Sci. Technol., 2001)

CTRD: a fast applet for computing signed translocation distance between genomes. - Wangsen Feng; Lusheng Wang 001; Daming Zhu (Bioinform., 2004)

An O(N2) algorithm for signed translocation problem. - Lusheng Wang 001; Daming Zhu; Xiaowen Liu; Shaohan Ma (APBC, 2005)

A New Pseudoknots Folding Algorithm for RNA Structure Prediction. - Hengwu Li; Daming Zhu (COCOON, 2005)

An O(n2) algorithm for signed translocation. - Lusheng Wang 001; Daming Zhu; Xiaowen Liu; Shaohan Ma (J. Comput. Syst. Sci., 2005)

DNA Encoding Method of Weight for Chinese Postman Problem. - Aili Han; Daming Zhu (IEEE Congress on Evolutionary Computation, 2006)

A New DNA-Based Approach to Solve the Maximum Weight Clique Problem. - Aili Han; Daming Zhu (ICIC (3), 2006)

A New DNA Encoding Method for Traveling Salesman Problem. - Aili Han; Daming Zhu (ICIC (3), 2006)

Complexity Analysis for the HEWN Algorithm. - Aili Han; Daming Zhu (ISDA (1), 2006)

DNA Computing Model for the Minimum Spanning Tree Problem. - Aili Han; Daming Zhu (SYNASC, 2006)

On the complexity of unsigned translocation distance. - Daming Zhu; Lusheng Wang 001 (Theor. Comput. Sci., 2006)

Prediction of Protein Subcellular Locations by Combining K-Local Hyperplane Distance Nearest Neighbor. - Hong Liu 001; Haodi Feng; Daming Zhu (ADMA, 2007)

Algorithms for the Well-Drilling Layout Problem. - Aili Han; Daming Zhu; Shouqiang Wang; Meixia Qu (ICIC (2), 2007)

A 1.75-approximation algorithm for unsigned translocation distance. - Yun Cui; Lusheng Wang 001; Daming Zhu (J. Comput. Syst. Sci., 2007)

Faster algorithms for sorting by transpositions and sorting by block interchanges. - Jianxing Feng; Daming Zhu (ACM Trans. Algorithms, 2007)

A 2.25-Approximation Algorithm for Cut-and-Paste Sorting of Unsigned Circular Permutations. - Xiaowen Lou; Daming Zhu (COCOON, 2008)

New Evolutionary Subset: Application to Symbiotic Evolutionary Algorithm for Job-Shop Scheduling Problem. - Zhaofeng Su 002; Hongze Qiu; Daming Zhu; Haodi Feng (ICNC (1), 2008)

Genome Rearrangement Algorithms for Unsigned Permutations with O(logn) Singletons. - Xiaowen Lou; Daming Zhu (TAMC, 2008)

A polynomial algorithm to compute the minimum degree spanning trees of directed acyclic graphs with applications to the broadcast problem. - Guohui Yao; Daming Zhu; Hengwu Li; Shaohan Ma (Discret. Math., 2008)

DNA solution based on sequence alignment to the Minimum Spanning Tree problem. - Aili Han; Daming Zhu; Jingchang Pan (Int. J. Bioinform. Res. Appl., 2008)

On Constrained Facility Location Problems. - Wei-Lin Li; Peng Zhang 008; Daming Zhu (J. Comput. Sci. Technol., 2008)

A (1.5 + epsilon)-Approximation Algorithm for Unsigned Translocation Distance. - Yun Cui; Lusheng Wang 001; Daming Zhu; Xiaowen Liu (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

DNA Encoding Methods in the Field of DNA Computing. - Aili Han; Daming Zhu (Computational Intelligence in Bioinformatics, 2008)

Translocation-Deletions Distance Formula for Sorting Genomes. - Fanchang Hao; Junfeng Luan; Daming Zhu (CSIE (4), 2009)

A (1+e)-Approximation Algorithm for Sorting by Short Block-Moves. - Haitao Jiang; Daming Zhu (CSO (1), 2009)

A Bicriteria Approximation Algorithm for Generalized k-Multicut in Trees. - Peng Zhang 008; Daming Zhu; Junfeng Luan (CSO (2), 2009)

Parameterized Complexity of Finding Elementary Modes in Metabolic Networks. - Hong Liu 001; Haodi Feng; Daming Zhu (IJCBS, 2009)

Polynomial-Time Algorithm for Sorting by Generalized Translocations. - Xiao Yin; Daming Zhu (TAMC, 2009)

Parameterized computational complexity of control problems in voting systems. - Hong Liu 001; Haodi Feng; Daming Zhu; Junfeng Luan (Theor. Comput. Sci., 2009)

Parameterized complexity of control problems in Maximin election. - Hong Liu 001; Daming Zhu (Inf. Process. Lett., 2010)

A predicting algorithm of RNA secondary structure based on stems. - Zhendong Liu; Hengwu Li; Daming Zhu (Kybernetes, 2010)

New Heuristic Algorithm of RNA Secondary Structure Prediction with Pseudoknots. - Zhendong Liu; Zhijun Zhang; Zaixue Liu; Daming Zhu (CIS, 2011)

Tight Bounds on Local Search to Approximate the Maximum Satisfiability Problems. - Daming Zhu; Shaohan Ma; Pingping Zhang (COCOON, 2011)

Algorithms for sorting unsigned linear genomes by the DCJ operations. - Haitao Jiang; Binhai Zhu; Daming Zhu (Bioinform., 2011)

A 14/11-approximation algorithm for sorting by short block-moves. - Haitao Jiang; Daming Zhu (Sci. China Inf. Sci., 2011)

Analysis of the Hamming Weight of the Extended wmbNAF. - Ming Li; Ali Miri; Daming Zhu (IACR Cryptol. ePrint Arch., 2011)

On Editing Graphs into 2-Club Clusters. - Hong Liu 001; Peng Zhang 008; Daming Zhu (FAW-AAIM, 2012)

De Novo Peptide Sequencing Based on Vertex Contraction Algorithm. - Zhexue Wei; Daming Zhu (CSO, 2012)

Protein-protein binding site identification by enumerating the configurations. - Fei Guo 001; Shuai Cheng Li 001; Lusheng Wang 001; Daming Zhu (BMC Bioinform., 2012)

On the toggling-branching recurrence of Computability Logic - Meixia Qu; Junfeng Luan; Daming Zhu (CoRR, 2012)

An approximation algorithm for the Generalized k-Multicut problem. - Peng Zhang 008; Daming Zhu; Junfeng Luan (Discret. Appl. Math., 2012)

Minimum common string partition revisited. - Haitao Jiang; Binhai Zhu; Daming Zhu; Hong Zhu 004 (J. Comb. Optim., 2012)

A new approximation algorithm for cut-and-paste sorting of unsigned circular permutations. - Xiaowen Lou; Daming Zhu (J. Comput. Syst. Sci., 2012)

A (1+ε)-approximation algorithm for sorting by short block-moves. - Haitao Jiang; Daming Zhu; Binhai Zhu (Theor. Comput. Sci., 2012)

The Duplication-Loss Problem: Novel Algorithms Based on k-NNI Local Search. - Hui Wang; Daming Zhu (BIFE, 2013)

A Dynamic Programming Algorithm for Unsigned (1, 2)-Exemplar Breakpoint Distance Problem with Span Constraint. - Zhexue Wei; Daming Zhu (BIFE, 2013)

An Approximation Scheme for RNA Folding Structure Prediction Including Pseudoknots. - Zhendong Liu; Daming Zhu; Wei Cui; Nan Liu (CIS, 2013)

The Algorithm for the Two-Sided Scaffold Filling Problem. - Nan Liu; Daming Zhu (TAMC, 2013)

Complexity and Approximation Results for the Min-Sum and Min-Max Disjoint Paths Problems. - Peng Zhang 008; Wenbo Zhao 001; Daming Zhu (Comput. Informatics, 2013)

Implementing program extraction from CL1-proofs. - Meixia Qu; Ke Chen; Daming Zhu; Junfeng Luan (CoRR, 2013)

New Heuristic Algorithm of RNA Structure Prediction Including Pseudoknots. - Zhendong Liu; Daming Zhu (J. Comput., 2013)

An Improved Approximation Algorithm for Scaffold Filling to Maximize the Common Adjacencies. - Nan Liu 006; Haitao Jiang; Daming Zhu; Binhai Zhu (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

An Exact Algorithm for the Zero Exemplar Breakpoint Distance Problem. - Daming Zhu; Lusheng Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Parameterized complexity of control by voter selection in Maximin, Copeland, Borda, Bucklin, and Approval election systems. - Hong Liu 001; Daming Zhu (Theor. Comput. Sci., 2013)

Sorting genomes by generalized translocations. - Xiao Yin; Daming Zhu (Theor. Comput. Sci., 2013)

A parameterized algorithm for (1, 2)-exemplar breakpoint distance. - Zhexue Wei; Daming Zhu; Lusheng Wang 001 (BIBM, 2014)

A (1.408+ε)-Approximation Algorithm for Sorting Unsigned Genomes by Reciprocal Translocations. - Haitao Jiang; Lusheng Wang 001; Binhai Zhu; Daming Zhu (FAW, 2014)

An 5/4-Approximation Algorithm for Sorting Permutations by Short Block Moves. - Haitao Jiang; Haodi Feng; Daming Zhu (ISAAC, 2014)

Approximating the Maximum Internal Spanning Tree Problem via a Maximum Path-Cycle Cover. - Xingfu Li; Daming Zhu (ISAAC, 2014)

A 4/3-approximation algorithm for finding a spanning tree to maximize its internal vertices. - Xingfu Li; Daming Zhu (CoRR, 2014)

Predicting scheme of RNA folding structure including pseudoknots. - Zhendong Liu; Daming Zhu; Hongwei Ma (Int. J. Sens. Networks, 2014)

Predicting Algorithm of RNA Folding Structure with Pseudoknots. - Zhendong Liu; Daming Zhu; Qionghai Dai (CIS, 2015)

Approximation and Nonapproximability for the One-Sided Scaffold Filling Problem. - Haitao Jiang; Jingjing Ma; Junfeng Luan; Daming Zhu (COCOON, 2015)

A New Algorithm for Intermediate Dataset Storage in a Cloud-Based Dataflow. - Jie Cheng 004; Daming Zhu; Binhai Zhu (FAW, 2015)

Local Search to Approximate Max NAE- k k -Sat Tightly. - Aiyong Xian; Kaiyuan Zhu; Daming Zhu; Lianrong Pu (FAW, 2015)

Isomorphism and similarity for 2-generation pedigrees. - Haitao Jiang; Guohui Lin; Weitian Tong; Daming Zhu; Binhai Zhu (BMC Bioinform., 2015)

A Dynamic Programming Algorithm For (1, 2)-Exemplar Breakpoint Distance. - Zhexue Wei; Daming Zhu; Lusheng Wang 001 (J. Comput. Biol., 2015)

A factor-(1.408 + ε) approximation for sorting unsigned genomes by reciprocal translocations. - Haitao Jiang; Lusheng Wang 001; Binhai Zhu; Daming Zhu (Theor. Comput. Sci., 2015)

Mining structural variants of Heduo12 using paired-end reads. - Huiqiang Jia; Haicho Wei; Daming Zhu; Jingjing Ma; Hai Yang 004; Ruizhi Wang; Xianzhong Feng (BIBM, 2016)

Genomic Scaffold Filling Revisited. - Haitao Jiang; Chenglin Fan; Boting Yang; Farong Zhong; Daming Zhu; Binhai Zhu (CPM, 2016)

A New Approximation Algorithm for Unsigned Translocation Sorting. - Lianrong Pu; Daming Zhu; Haitao Jiang (WABI, 2016)

A 1.5-Approximation Algorithm for Two-Sided Scaffold Filling. - Nan Liu 006; Daming Zhu; Haitao Jiang; Binhai Zhu (Algorithmica, 2016)

A spectrum graph-based protein sequence filtering algorithm for proteoform identification by top-down mass spectrometry. - Runmin Yang; Daming Zhu; Qiang Kou; Poornima Bhat-Nakshatri; Harikrishna Nakshatri; Si Wu; Xiaowen Liu (BIBM, 2017)

A New Approximation Algorithm for the Maximum Stacking Base Pairs Problem from RNA Secondary Structures Prediction. - Aizhong Zhou; Haitao Jiang; Jiong Guo; Daming Zhu (COCOA (1), 2017)

A 1.4-Approximation Algorithm for Two-Sided Scaffold Filling. - Jingjing Ma; Haitao Jiang; Daming Zhu; Shu Zhang 005 (FAW, 2017)

IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract). - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (ISBRA, 2017)

Improved algorithms for intermediate dataset storage in a cloud-based dataflow. - Jie Cheng 004; Daming Zhu; Binhai Zhu (Theor. Comput. Sci., 2017)

Approximating Max NAE-k-SAT by anonymous local search. - Aiyong Xian; Kaiyuan Zhu; Daming Zhu; Lianrong Pu; Hong Liu 001 (Theor. Comput. Sci., 2017)

The Longest Common Exemplar Subsequence Problem. - Shu Zhang 005; Ruizhi Wang; Daming Zhu; Haitao Jiang; Haodi Feng; Jiong Guo; Xiaowen Liu (BIBM, 2018)

Can a permutation be sorted by best short swaps?. - Shu Zhang 005; Daming Zhu; Haitao Jiang; Jingjing Ma; Jiong Guo; Haodi Feng (CPM, 2018)

PASA: Identifying More Credible Structural Variants of Hedou12. - Huiqiang Jia; Haichao Wei; Daming Zhu; Ruizhi Wang; Haodi Feng; Xiangzhong Feng (ICIC (1), 2018)

Improved Indel Detection Algorithm Based on Split-Read and Read-Depth. - Hai Yang 004; Daming Zhu; Huiqiang Jia (ICIC (3), 2018)

DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees. - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (ICIC (1), 2018)

Predicting Model and Algorithm in RNA Folding Structure Including Pseudoknots. - Zhendong Liu; Daming Zhu; Qionghai Dai (Int. J. Pattern Recognit. Artif. Intell., 2018)

A 2-approximation algorithm for the contig-based genomic scaffold filling problem. - Haitao Jiang; Letu Qingge; Daming Zhu; Binhai Zhu (J. Bioinform. Comput. Biol., 2018)

Can a breakpoint graph be decomposed into none other than 2-cycles? - Lianrong Pu; Yu Lin 001; Daming Zhu; Haitao Jiang (Theor. Comput. Sci., 2018)

Preface. - Daming Zhu; Sergey Bereg (Theor. Comput. Sci., 2018)

An Approximation Algorithm for Sorting by Bounded Singleton Moves. - Shengjun Xie; Haodi Feng; Haitao Jiang; Junfeng Luan; Daming Zhu (COCOON, 2019)

A 2-Approximation Algorithm for the Complementary Maximal Strip Recovery Problem. - Haitao Jiang; Jiong Guo; Daming Zhu; Binhai Zhu (CPM, 2019)

Maximum Stacking Base Pairs: Hardness and Approximation by Nonlinear LP-Rounding. - Lixin Liu; Haitao Jiang; Peiqiang Liu; Binhai Zhu; Daming Zhu (ISBRA, 2019)

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees. - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (BMC Bioinform., 2019)

Improved predicting algorithm of RNA pseudoknotted structure. - Zhendong Liu; Daming Zhu; Qionghai Dai (Int. J. Comput. Sci. Eng., 2019)

Combinatorial Detection Algorithm for Copy Number Variations Using High-throughput Sequencing Reads. - Hai Yang 004; Daming Zhu (Int. J. Pattern Recognit. Artif. Intell., 2019)

An approximation algorithm for genome sorting by reversals to recover all adjacencies. - Shanshan Zhai; Peng Zhang 008; Daming Zhu; Weitian Tong; Yao Xu; Guohui Lin (J. Comb. Optim., 2019)

SVLR: Genome Structure Variant Detection Using Long Read Sequencing Data. - Wenyan Gu; Aizhong Zhou; Lusheng Wang 001; Shiwei Sun; Xuefeng Cui; Daming Zhu (ISBRA, 2020)

Maximum Stacking Base Pairs: Hardness and Approximation by Nonlinear Linear Programming-Rounding. - Lixin Liu; Haitao Jiang; Peiqiang Liu; Binhai Zhu; Daming Zhu (J. Comput. Biol., 2020)

A 1.375-approximation algorithm for unsigned translocation sorting. - Lianrong Pu; Daming Zhu; Haitao Jiang (J. Comput. Syst. Sci., 2020)

Improved detection algorithm for copy number variations based on hidden Markov model. - Hai Yang 004; Daming Zhu (Multim. Tools Appl., 2020)

PASA: Identifying More Credible Structural Variants of Hedou12. - Huiqiang Jia; Haichao Wei; Daming Zhu; Jingjing Ma; Hai Yang 004; Ruizhi Wang; Xianzhong Feng (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads. - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads". - Jin Zhao 005; Haodi Feng; Daming Zhu; Chi Zhang 021; Ying Xu 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Hydrogen bonds meet self-attention: all you need for protein structure embedding. - Cheng Chen; Yuguo Zha; Daming Zhu; Kang Ning 001; Xuefeng Cui (BIBM, 2021)

TransCoord: Genome-guided Transcripts Assembly by Coordinating Candidate Paths into Two-phased Linear Programming. - Chenchen Li; Jin Zhao 005; Haodi Feng; Daming Zhu (BIBM, 2021)

rzMLP-DTA: gMLP network with ReZero for sequence-based drug-target affinity prediction. - Zongzhao Qiu; Qihong Jiao; Yuxiao Wang 002; Cheng Chen; Daming Zhu; Xuefeng Cui (BIBM, 2021)

mzMD: A New Storage and Retrieval System for Mass Spectrometry Data. - Runmin Yang; Jingjing Ma; Shu Zhang 005; Yu Zheng; Lusheng Wang 001; Daming Zhu (ICIC (3), 2021)

Sorting a Permutation by Best Short Swaps. - Shu Zhang 005; Daming Zhu; Haitao Jiang; Jiong Guo; Haodi Feng; Xiaowen Liu (Algorithmica, 2021)

SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data. - Wenyan Gu; Aizhong Zhou; Lusheng Wang 001; Shiwei Sun; Xuefeng Cui; Daming Zhu (J. Comput. Biol., 2021)

A 43-approximation algorithm for the Maximum Internal Spanning Tree Problem. - Xingfu Li; Daming Zhu; Lusheng Wang 001 (J. Comput. Syst. Sci., 2021)

Estimation of Salinity Content in Different Saline-Alkali Zones Based on Machine Learning Model Using FOD Pretreatment Method. - Chengbiao Fu; Anhong Tian; Daming Zhu; Junsan Zhao; Heigang Xiong (Remote. Sens., 2021)

Study on the Pretreatment of Soil Hyperspectral and Na+ Ion Data under Different Degrees of Human Activity Stress by Fractional-Order Derivatives. - Anhong Tian; Junsan Zhao; Bo-Hui Tang; Daming Zhu; Chengbiao Fu; Heigang Xiong (Remote. Sens., 2021)

Hyperspectral Prediction of Soil Total Salt Content by Different Disturbance Degree under a Fractional-Order Differential Model with Differing Spectral Transformations. - Anhong Tian; Junsan Zhao; Bo-Hui Tang; Daming Zhu; Chengbiao Fu; Heigang Xiong (Remote. Sens., 2021)

On the solution bound of two-sided scaffold filling. - Jingjing Ma; Daming Zhu; Haitao Jiang; Binhai Zhu (Theor. Comput. Sci., 2021)

Approximation algorithms for the maximum vertex coverage problem on bounded degree graphs. - Peiyan Zhou; Haitao Jiang; Daming Zhu; Binhai Zhu (Theor. Comput. Sci., 2021)

Longest k-tuple Common Sub-Strings. - Tiantian Li; Daming Zhu; Haitao Jiang; Haodi Feng; Xuefeng Cui (BIBM, 2022)

Prediction Algorithm of DNA Sites Based on Weighted Feature Matrix. - Zhendong Liu; Xi Chen; Dongyan Li; Xinrong Lv; Daming Zhu; Xiaofeng Li (BIBM, 2022)

Predicting Algorithm of Transcription Factor Binding Sites Based on Weighted Multi-Grained Scanning. - Zhendong Liu; Dongyan Li; Xi Chen; Xinrong Lv; Daming Zhu; Xiaofeng Li (BIBM, 2022)

Pretraining Transformers for TCR-pMHC Binding Prediction. - Jinsheng Shang; Qihong Jiao; Cheng Chen; Daming Zhu; Xuefeng Cui (BIBM, 2022)

DLmeta: a deep learning method for metagenomic identification. - Yu Zhang; Chenchen Li; Haodi Feng; Daming Zhu (BIBM, 2022)

mzMD: visualization-oriented MS data storage and retrieval. - Runmin Yang; Jingjing Ma; Shu Zhang 005; Yu Zheng; Lusheng Wang 001; Daming Zhu (Bioinform., 2022)

Algorithms and Hardness for Scaffold Filling to Maximize Increased Duo-Preservations. - Jingjing Ma; Haitao Jiang; Daming Zhu; Runmin Yang (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly. - Jin Zhao 005; Haodi Feng; Daming Zhu; Yu Lin 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Approximation algorithms for sorting by bounded singleton moves. - Shengjun Xie; Haodi Feng; Haitao Jiang; Daming Zhu (Theor. Comput. Sci., 2022)

Identification and Analysis of Landslides in the Ahai Reservoir Area of the Jinsha River Basin Using a Combination of DS-InSAR, Optical Images, and Field Surveys. - Yongfa Li; Xiaoqing Zuo; Daming Zhu; Wenhao Wu; Xu Yang; Shipeng Guo; Chao Shi; Cheng Huang; Fang Li; Xinyu Liu (Remote. Sens., 2022)

De Novo Molecular Structure Generation from Mass Spectra. - Yanmin Liu; Xuan Zhang; Wei Zhao; Daming Zhu; Xuefeng Cui (BIBM, 2023)

Improved Approximation Algorithms for Sorting Unsigned Genomes by Reversals. - Chengcheng Sun; Haitao Jiang; Daming Zhu (BIBM, 2023)

Minimize Maximum Coverage of Fragment Alignment Selection. - Yuyang Wang; Haitao Jiang; Haodi Feng; Daming Zhu (BIBM, 2023)

Longest Order Conserved Repetition-free Subsequences. - Shu Zhang 005; Qichen Wang 005; Daming Zhu; Haitao Jiang (BIBM, 2023)

Cabbage Can't Always Be Transformed into Turnip: Decision Algorithms for Sorting by Symmetric Reversals. - Xin Tong; Yixiao Yu; Ziyi Fang; Haitao Jiang; Lusheng Wang 001; Binhai Zhu; Daming Zhu (COCOON (2), 2023)

On Sorting by Flanked Transpositions. - Huixiu Xu; Xin Tong; Haitao Jiang; Lusheng Wang 001; Binhai Zhu; Daming Zhu (ISBRA, 2023)

Men Can't Always be Transformed into Mice: Decision Algorithms and Complexity for Sorting by Symmetric Reversals. - Xin Tong; Yixiao Yu; Ziyi Fang; Haitao Jiang; Lusheng Wang 001; Binhai Zhu; Daming Zhu (CoRR, 2023)

ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins. - Cheng Chen; Yuguo Zha; Daming Zhu; Kang Ning 001; Xuefeng Cui (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

ULTR-asm: assembly of ultra long tandem repeat. - Xiaolin Li; Lianrong Pu; Kuanqiang Tang; Xianzhong Feng; Daming Zhu (BIBM, 2024)

How to Integrate Non-Sequence Features for Peptide Collision Cross Section Prediction with Deep Learning? - Zhimeng Tian; Zizheng Nie; Yong Zhang; Daming Zhu; Xuefeng Cui (BIBM, 2024)

On Sorting by Unsigned Symmetric Reversals. - Wenfeng Lai; Haitao Jiang; Daming Zhu; Binhai Zhu (COCOON (1), 2024)

Can the 1.375 Approximation Ratio of Unsigned Genomes Distances be Improved? - Chengcheng Sun; Haitao Jiang; Lusheng Wang 001; Daming Zhu (COCOON (1), 2024)

On Sorting Signed Permutations by Flanked DCJs. - Xin Tong; Haitao Jiang; Daming Zhu; Lianrong Pu (COCOON (1), 2024)

Longest (k]-Tuple Common Substrings. - Tiantian Li; Haitao Jiang; Lusheng Wang 001; Daming Zhu (IJTCS-FAW, 2024)

FOKHic: A Framework of ${ varvec{k}}$-mer Based Hierarchical Classification. - Yu Zhang; Yang Zhou; Haodi Feng; Daming Zhu (ICIC (LNAI 6), 2024)

Flanked Block-Interchange Distance on Strings. - Tiantian Li; Haitao Jiang; Binhai Zhu; Lusheng Wang 001; Daming Zhu (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

New approximation algorithms for RNA secondary structures prediction problems by local search. - Aizhong Zhou; Haodi Feng; Jiong Guo; Haitao Jiang; Nan Liu 006; Binhai Zhu; Daming Zhu (Theor. Comput. Sci., 2024)

Accuracy Assessment of Geometric-Distortion Identification Methods for Sentinel-1 Synthetic Aperture Radar Imagery in Highland Mountainous Regions. - Chao Shi; Xiaoqing Zuo; Jianming Zhang; Daming Zhu; Yongfa Li; Jinwei Bu (Sensors, 2024)

1DCAE-TSSAMC: Two-Stage Multi-Dimensional Spatial Features Based Multi-View Deep Clustering for Time Series Data. - Jianglong Chen; Weiwei Song; Xiaoqing Zuo; Kang Zhao; Baoxuan Jin; Daming Zhu; Bolan Dai (Int. J. Uncertain. Fuzziness Knowl. Based Syst., 2024)

Improved Approximation Algorithm and Hardness Result for Sorting Unsigned Strings by Symmetric Reversals. - Wenfeng Lai; Haitao Jiang; Daming Zhu; Binhai Zhu (COCOON (2), 2025)

Longest Double-Bounded (k]-Tuple Common Substrings. - Tiantian Li; Siqi Jiang; Haitao Jiang; Daming Zhu (COCOON (2), 2025)

A Randomized FPT Approximation Algorithm for Sorting Unsigned Genomes by Translocations: Breaking the 1.375 Approximation Barrier. - Chengcheng Sun; Haitao Jiang; Guojun Li; Daming Zhu (COCOON (1), 2025)

Finding a Set of Long Common Substrings with Repeats from m Input Strings. - Tiantian Li; Lusheng Wang 001; Daming Zhu (IJTCS-FAW, 2025)

VirB: A Virus Hierarchical Classification Method Based on ModernBERT. - Haizhen Huang; Haodi Feng; Daming Zhu (ICIC (26), 2025)

Enough Consecutive Matches in k-Tuple Common Substrings. - Tiantian Li; Siqi Jiang; Haitao Jiang; Lianrong Pu; Haodi Feng; Xuefeng Cui; Lizhen Cui; Daming Zhu (ICIC (26), 2025)