An OBI Ontology Datum Proof Sheet. - Damion M. Dooley; Emma J. Griffiths; Fiona S. L. Brinkman; William W. L. Hsiao (ICBO/BioCreative, 2016)

FoodON: A Global Farm-to-Fork Food Ontology. - Emma J. Griffiths; Damion M. Dooley; Pier Luigi Buttigieg; Robert Hoehndorf; Fiona S. L. Brinkman; William W. L. Hsiao (ICBO/BioCreative, 2016)

Sequence database versioning for command line and Galaxy bioinformatics servers. - Damion M. Dooley; Aaron J. Petkau; Gary H. Van Domselaar; William W. L. Hsiao (Bioinform., 2016)

FoodOn: A Semantic Ontology Approach for Mapping Foodborne Disease Metadata. - Dalia A. Alghamdi; Damion M. Dooley; Gurinder Gosal; Emma J. Griffiths; Fiona S. L. Brinkman; William W. L. Hsiao (ICBO, 2017)

The Genomic Epidemiology Ontology and GEEM Ontology Reusability Platform. - Damion M. Dooley; Emma J. Griffiths; Gurinder Gosal; Fiona S. L. Brinkman; William W. L. Hsiao (JOWO, 2017)

NGBO: The Introduction of -omics Data to Biobanking Ontology. - Dalia A. Alghamdi; Damion M. Dooley; Emma J. Griffiths; Gurinder Pal Gosal; William W. L. Hsiao (ISWC (P&D/Industry/BlueSky), 2018)

NGBO: Introducing -omics Data into Biobanking Ontology. - Dalia A. Alghamdi; Damion M. Dooley; Gurinder Gosal; Emma J. Griffiths; William W. L. Hsiao (ICBO, 2019)

An Ontology-Driven Web Platform for Publishing Data Specifications to Support Data Sharing. - Damion M. Dooley; Ivan S. Gill; Emma J. Griffiths; William L. Hsiao (ICBO, 2019)

3D Visualization of Application Ontology Class Hierarchies. - Damion M. Dooley; William W. L. Hsiao (JOWO, 2019)

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. - Brian P. Alcock; Amogelang R. Raphenya; Tammy T. Y. Lau; Kara K. Tsang; Mégane Bouchard; Arman Edalatmand; William Huynh; Anna-Lisa V. Nguyen; Annie A. Cheng; Sihan Liu; Sally Y. Min; Anatoly Miroshnichenko; et al. (Nucleic Acids Res., 2020)

OBO Foundry Food Ontology Interconnectivity. - Damion M. Dooley; Liliana Andrés-Hernández; Georgeta Bordea; Leigh Carmody; Duccio Cavalieri; Lauren E. Chan; Pol Castellano-Escuder; Carl Lachat; Fleur Mougin; Francesco Vitali; Chen Yang 022; Magalie Weber; et al. (JOWO, 2021)

Streamlining FoodOn Seafood Nomenclature using a Semi-automated ROBOT Template-driven Approach. - Anoosha Sehar; Damion M. Dooley; Amanda Windsor; William L. Hsiao (JOWO, 2021)

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. - Rebecca C. Jackson; Nicolas Matentzoglu; James A. Overton; Randi Vita; James P. Balhoff; Pier Luigi Buttigieg; Seth Carbon; Mélanie Courtot; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Nomi L. Harris; et al. (Database J. Biol. Databases Curation, 2021)

Standardization of assay representation in the Ontology for Biomedical Investigations. - Randi Vita; Jie Zheng 001; Rebecca C. Jackson; Damion M. Dooley; James A. Overton; Mark A. Miller; Daniel C. Berrios; Richard H. Scheuermann; Yongqun He; Hande Küçük-McGinty; Mathias Brochhausen; Aisyah Yu Lin; et al. (Database J. Biol. Databases Curation, 2021)

Toward an Occupation Ontology, OccO. - Sam Smith; Damion M. Dooley; Eric Merrell; John Beverley; Yongqun He (ICBO, 2022)

Foundational Development of an Occupation Ontology. - Yongqun He; Samuel Smith; Damion M. Dooley (JOWO, 2022)

Charting Past, Present, and Future Research in the Semantic Web and Interoperability. - Abderahman Rejeb; John G. Keogh; Wayne Martindale; Damion M. Dooley; Edward Smart; Steven Simske; Samuel Fosso Wamba; John G. Breslin; Kosala Yapa Bandara; Subhasis Thakur; Kelly Liu; Bridgette Crowley; et al. (Future Internet, 2022)

Besoins ontologiques pour la transformation des aliments. - Damion M. Dooley; Magalie Weber; Liliana Ibanescu; Matthew Lange; Lauren E. Chan; Larisa N. Soldatova; Chen Yang 022; Robert Warren; Cogan Shimizu; Hande McGinty; William Hsiao (IC, 2023)

Tracking the Functional Effects of SARS-CoV-2 Genomic Variants: an Ontology-Driven Approach. - Madeline Iseminger; Muhammad Zohaib Anwar 001; Rhiannon Cameron; Damion M. Dooley; Paul Gordon; Emma J. Griffiths; Anoosha Sehar; Khushi Vora; William Hsiao (ICBO, 2023)

The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards. - John Beverley; Sam Smith; Matthew Diller; William D. Duncan; Jie Zheng 001; John W. Judkins; William R. Hogan; Robin McGill; Damion M. Dooley; Yongqun He (JOWO, 2023)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). - Sabrina Toro; Anna V. Anagnostopoulos; Sue Bello; Kai Lewis Blumberg; Rhiannon Cameron; Leigh Carmody; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Petra Fey; Pascale Gaudet; Nomi L. Harris; et al. (CoRR, 2023)

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. - Brian P. Alcock; William Huynh; Romeo Chalil; Keaton W. Smith; Amogelang R. Raphenya; Mateusz A. Wlodarski; Arman Edalatmand; Aaron J. Petkau; Sohaib A. Syed; Kara K. Tsang; Sheridan J. C. Baker; Mugdha Dave; et al. (Nucleic Acids Res., 2023)

Ontological how and why: action and objective of planned processes in the food domain. - Damion M. Dooley; Tarini Naravane (Frontiers Artif. Intell., 2023)

What is food? An investigation into food realizables. - Adrien Barton; Fumiaki Toyoshima; Damion M. Dooley (JOWO, 2024)

OBO Foundry food ontology interconnectivity. - Damion M. Dooley; Liliana Andrés-Hernández; Georgeta Bordea; Leigh Carmody; Duccio Cavalieri; Lauren E. Chan; Pol Castellano-Escuder; Carl Lachat; Fleur Mougin; Francesco Vitali; Chen Yang 022; Magalie Weber; et al. (Semantic Web, 2024)

Food process ontology requirements. - Damion M. Dooley; Magalie Weber; Liliana Ibanescu; Matthew Lange; Lauren E. Chan; Larisa N. Soldatova; Chen Yang 022; Robert Warren; Cogan Shimizu; Hande McGinty; William Hsiao (Semantic Web, 2024)

Reuse of the FoodOn ontology in a knowledge base of food composition data. - Katherine Thornton; Kenneth Seals-Nutt; Mika Matsuzaki; Damion M. Dooley (Semantic Web, 2024)

Concretizing plan specifications as realizables within the OBO foundry. - William D. Duncan; Matthew Diller; Damion M. Dooley; William R. Hogan; John Beverley (J. Biomed. Semant., 2024)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). - Sabrina Toro; Anna V. Anagnostopoulos; Susan M. Bello; Kai Lewis Blumberg; Rhiannon Cameron; Leigh Carmody; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Petra Fey; Pascale Gaudet; Nomi L. Harris; et al. (J. Biomed. Semant., 2024)