FlexServ: an integrated tool for the analysis of protein flexibility. - Jordi Camps; Oliver Carrillo; Agustí Emperador; Laura Orellana; Adam Hospital; Manuel Rueda; Damjan Cicin-Sain; Marco D'Abramo; Josep Lluis Gelpí; Modesto Orozco (Bioinform., 2009)

MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations. - Adam Hospital; Pau Andrio; Carlos Fenollosa; Damjan Cicin-Sain; Modesto Orozco; Josep Lluis Gelpí (Bioinform., 2012)

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network. - Anton Crombach; Karl R. Wotton; Damjan Cicin-Sain; Maksat Ashyraliyev; Johannes Jaeger (PLoS Comput. Biol., 2012)

Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in Drosophila melanogaster. - Kolja Becker; Eva Balsa-Canto; Damjan Cicin-Sain; Astrid Hoermann; Hilde Janssens; Julio R. Banga; Johannes Jaeger (PLoS Comput. Biol., 2013)

BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (CoRR, 2014)

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (BMC Syst. Biol., 2015)

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos. - Damjan Cicin-Sain; Antonio Hermoso Pulido; Anton Crombach; Karl R. Wotton; Eva Jiménez-Guri; Jean-François Taly; Guglielmo Roma; Johannes Jaeger (Nucleic Acids Res., 2015)

Scatter Search Applied to the Inference of a Development Gene Network. - Amir Masoud Abdol; Damjan Cicin-Sain; Jaap A. Kaandorp; Anton Crombach (Comput., 2017)