Models of SIV rebound after treatment interruption that involve multiple reactivation events. - Christiaan H. van Dorp; Jessica M. Conway; Dan H. Barouch; James B. Whitney; Alan S. Perelson (PLoS Comput. Biol., 2020)

Zika virus dynamics: Effects of inoculum dose, the innate immune response and viral interference. - Katharine Best; Dan H. Barouch; Jérémie Guedj; Ruy M. Ribeiro; Alan S. Perelson (PLoS Comput. Biol., 2021)

Modeling resistance to the broadly neutralizing antibody PGT121 in people living with HIV-1. - Tyler Cassidy; Kathryn E. Stephenson; Dan H. Barouch; Alan S. Perelson (PLoS Comput. Biol., 2024)