How Protein Stability and New Functions Trade Off. - Nobuhiko Tokuriki; Francois Stricher; Luis Serrano; Dan S. Tawfik (PLoS Comput. Biol., 2008)

Systematic Mapping of Protein Mutational Space by Prolonged Drift Reveals the Deleterious Effects of Seemingly Neutral Mutations. - Liat Rockah-Shmuel; Ágnes Tóth-Petróczy; Dan S. Tawfik (PLoS Comput. Biol., 2015)

Local fitness landscape of the green fluorescent protein. - Karen S. Sarkisyan; Dmitry Bolotin; Margarita V. Meer; Dinara R. Usmanova; Alexander S. Mishin; George V. Sharonov; Dmitry N. Ivankov; Nina G. Bozhanova; Mikhail S. Baranov; Onuralp Soylemez; Natalya S. Bogatyreva; Peter K. Vlasov; et al. (Nat., 2016)

Determining the interaction status and evolutionary fate of duplicated homomeric proteins. - Saurav Mallik; Dan S. Tawfik (PLoS Comput. Biol., 2020)