Pathway Commons at Virtual Cell: use of pathway data for mathematical modeling. - Michael L. Blinov; James C. Schaff; Oliver Ruebenacker; Xintao Wei; Dan Vasilescu; Fei Gao; Frank Morgan; Li Ye; Anuradha Lakshminarayana; Ion I. Moraru; Leslie M. Loew (Bioinform., 2014)

Rule-based modeling with Virtual Cell. - James C. Schaff; Dan Vasilescu; Ion I. Moraru; Leslie M. Loew; Michael L. Blinov (Bioinform., 2016)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)