The cross-bicepstrum: properties and applications for signal reconstruction and system identification. - Dana H. Brooks; Chrysostomos L. Nikias (ICASSP, 1991)

Parallel Processing for Biomedical Signal Processing. - Elias S. Manolakos; Haris M. Stellakis; Dana H. Brooks (Computer, 1991)

Ill-conditioned inverse problems: a solution using the complex cepstrum of higher order spectra. - Dana H. Brooks (ICASSP, 1992)

The cross-bicepstrum: definition, properties, and application for simultaneous reconstruction of three nonminimum phase signals. - Dana H. Brooks; Chrysostomos L. Nikias (IEEE Trans. Signal Process., 1993)

Multichannel adaptive blind deconvolution using the complex cepstrum of higher order cross-spectra. - Dana H. Brooks; Chrysostomos L. Nikias (IEEE Trans. Signal Process., 1993)

Imaging the Electrical Activity of the Heart: Direct and Inverse Approaches. - Dana H. Brooks; Robert S. MacLeod (ICIP (3), 1994)

Best basis segmentation of ECG signals using novel optimality criteria. - Dana H. Brooks; Hamid Krim; Jean-Christophe Pesquet; Robert S. MacLeod (ICASSP, 1996)

Electrical imaging of the heart. - Dana H. Brooks; Rob S. MacLeod (IEEE Signal Process. Mag., 1997)

Edge Preserving Image Restoration using Convex Optimization. - Kadagattur G. Srinidhi; Dana H. Brooks (ICIP (2), 1998)

Detection of point targets in image sequences by hypothesis testing: a temporal test first approach. - Alexis Tzannes; Dana H. Brooks (ICASSP, 1999)

Inverse electrocardiography by simultaneous imposition of multiple constraints. - Dana H. Brooks; Ghandi F. Ahmad; Robert S. MacLeod; George M. Maratos (IEEE Trans. Biomed. Eng., 1999)

Imaging the body with diffuse optical tomography. - David A. Boas; Dana H. Brooks; Eric L. Miller 001; Charles A. DiMarzio; Misha E. Kilmer; Richard J. Gaudette; Quan Zhang (IEEE Signal Process. Mag., 2001)

Emerging medical imaging modalities. - Dana H. Brooks (IEEE Signal Process. Mag., 2001)

An efficient region of interest acquisition method for dynamic magnetic resonance imaging. - William Scott Hoge; Eric L. Miller 001; Hanoch Lev-Ari; Dana H. Brooks; William Clement Karl; Lawrence P. Panych (IEEE Trans. Image Process., 2001)

On the effectiveness of doubly adaptive estimation for dynamic MRI sequence acquisitions. - William Scott Hoge; Lawrence P. Panych; Dana H. Brooks; Eric L. Miller 001 (ISBI, 2002)

A multi-resolution admissible solution approach for diffuse optical tomography. - Yiheng Zhang; Dana H. Brooks; David A. Boas (ISBI, 2002)

Closed-form solution for positioning based on angle of arrival measurements. - Alba Pagès-Zamora; Josep Vidal; Dana H. Brooks (PIMRC, 2002)

A doubly adaptive approach to dynamic MRI sequence estimation. - William Scott Hoge; Eric L. Miller 001; Hanoch Lev-Ari; Dana H. Brooks; Lawrence P. Panych (IEEE Trans. Image Process., 2002)

Diffuse optical tomography using a linear matrix inequality algorithm in an admissible solution approach. - Amir M. Niroumand; Dana H. Brooks; Bahram Shafai (ICIP (1), 2003)

A Bayesian approach to inclusion and performance analysis of using extra information in bioelectric inverse problems. - Yesim Serinagaoglu; Dana H. Brooks; Robert S. MacLeod (ICIP (1), 2003)

Improved alignment method for noisy high-resolution ECG and Holter records using multiscale cross-correlation. - Eric Laciar; Raimon Jané; Dana H. Brooks (IEEE Trans. Biomed. Eng., 2003)

On the Regularization of SENSE and Space-RIP in Parallel MR Imaging. - William Scott Hoge; Bruno Madore; Walid E. Kyriakos; Dana H. Brooks (ISBI, 2004)

SCIRun/BioPSE: Integrated Problem Solving Environment for Bioelectric Field Problems and Visualization. - Robert S. MacLeod; David M. Weinstein; J. Davison de St. Germain; Christopher R. Johnson 001; Steven G. Parker; Dana H. Brooks (ISBI, 2004)

Reduction of Physiological Interference in Optical Functional Neuroimaging Using Eigenvector-Based Spatial Filtering. - Yiheng Zhang; Dana H. Brooks; Maria Angela Franceschini; David A. Boas (ISBI, 2004)

Analysis of Spatial-Temporal Regularization Methods for Linear Inverse Problems from a Common Statistical Framework. - Yiheng Zhang; Alireza Ghodrati; Dana H. Brooks (ISBI, 2004)

Comparative psychometric analysis of vector and isochrone cardiac activation maps. - Tamara N. Fitzgerald; Dana H. Brooks; John K. Triedman (IEEE Trans. Biomed. Eng., 2004)

A Method to Reconstruct Activation Wavefronts Without Isotropy Assumptions Using a Level Sets Approach. - Felipe Calderero; Alireza Ghodrati; Dana H. Brooks; Gilead Tadmor; Robert S. MacLeod (FIMH, 2005)

A Deformable-radius B-Spline Method for Shape-based Inverse Problems, as Applied to Electrical Impedance Tomography. - Saeed Babaeizadeh; Dana H. Brooks; David Isaacson (ICASSP (2), 2005)

Sampling Strategies to Enable Computationally Efficient SPACE-RIP for 3D Parallel MR Imaging. - William Scott Hoge; Lei Zhao; Dana H. Brooks; Walid E. Kyriakos (ICASSP (2), 2005)

Identification of cardiac rhythm features by mathematical analysis of vector fields. - Tamara N. Fitzgerald; Dana H. Brooks; John K. Triedman (IEEE Trans. Biomed. Eng., 2005)

Bayesian solutions and performance analysis in bioelectric inverse problems. - Yesim Serinagaoglu; Dana H. Brooks; Robert S. MacLeod (IEEE Trans. Biomed. Eng., 2005)

Venous catheter based mapping of ectopic epicardial activation: training data set selection for statistical estimation. - Bülent Yilmaz; Robert S. MacLeod; Bonnie B. Punske; Bruno Taccardi; Dana H. Brooks (IEEE Trans. Biomed. Eng., 2005)

Spherical harmonics for shape-based inverse problems as applied to electrical impedance tomography. - Saeed Babaeizadeh; Dana H. Brooks (Computational Imaging, 2006)

A wavefront-based constraint for potential surface solutions in inverse electrocardiography. - Alireza Ghodrati; Andrew Keely; Gilead Tadmor; Robert S. MacLeod; Dana H. Brooks (EMBC, 2006)

On the Complimentarity of Sense and Grappa in Parallel MR Imaging. - W. Scott Hoge; Dana H. Brooks (EMBC, 2006)

Image Based Modeling of Defibrillation in Children. - Matthew A. Jolley; John K. Triedman; Carl-Fredrik Westin; David M. Weinstein; Robert S. MacLeod; Dana H. Brooks (EMBC, 2006)

Imaging Error from Mislocation of Surface Sensors: Sensitivity, Detection, and Estimate Correction, with Application to EIT. - Saeed Babaeizadeh; Dana H. Brooks (ICASSP (2), 2006)

Effects of electrode location error on boundary element impedance tomography solutions: CR bounds and simulation results. - Saeed Babaeizadeh; Dana H. Brooks (ISBI, 2006)

Fast regularized reconstruction of non-uniformly subsampled parallel MRI data. - William Scott Hoge; Misha Elena Kilmer; Steven Haker; Dana H. Brooks; Walid E. Kyriakos (ISBI, 2006)

A statistical method for inverting the Born ratio. - Damon Hyde; Eric L. Miller 001; Dana H. Brooks; Vasilis Ntziachristos (ISBI, 2006)

A spatio-temporal reconstruction algorithm for diffuse optical tomography based on a hemodynamic response function model. - Yiheng Zhang; Dana H. Brooks; David A. Boas (ISBI, 2006)

Wavefront-based models for inverse electrocardiography. - Alireza Ghodrati; Dana H. Brooks; Gilead Tadmor; Robert S. MacLeod (IEEE Trans. Biomed. Eng., 2006)

Improved Performance of Bayesian Solutions for Inverse Electrocardiography Using Multiple Information Sources. - Yesim Serinagaoglu; Dana H. Brooks; Robert S. MacLeod (IEEE Trans. Biomed. Eng., 2006)

Electrode boundary conditions and experimental validation for BEM-based EIT forward and inverse solutions. - Saeed Babaeizadeh; Dana H. Brooks; David Isaacson; Jonathan C. Newell (IEEE Trans. Medical Imaging, 2006)

Analysis of reconstructions in full view fluorescence molecular tomography. - Damon Hyde; Antoine Soubret; Joshua Dunham; Tobias Lasser; Eric L. Miller 001; Dana H. Brooks; Vasilis Ntziachristos (Computational Imaging, 2007)

Open-Source Environment for Interactive Finite Element Modeling of Optimal ICD Electrode Placement. - Matthew A. Jolley; Jeroen G. Stinstra; David M. Weinstein; Steve Pieper 001; Raúl San José Estépar; Gordon L. Kindlmann; Robert S. MacLeod; Dana H. Brooks; John K. Triedman (FIMH, 2007)

Comparing Mr Imaging Properties of Spiral Trajectories Using the Singular Spectrum of the Analytical Fourier Basis Cross-Correlation Matrix. - Onur Afacan; Dimitris Mitsouras; Dana H. Brooks; Robert V. Mulkern; Frank J. Rybicki (ISBI, 2007)

Fast Regularized Reconstruction of Non-Uniformly Subsampled Partial-Fourier Parallel MRI Data. - William Scott Hoge; Misha Elena Kilmer; Carlos Zacarias-Almarcha; Dana H. Brooks (ISBI, 2007)

Analysis and Exploitation of Matrix Structure Arising in Linearized Optical Tomographic Imaging. - Damon Hyde; Misha Elena Kilmer; Dana H. Brooks; Eric L. Miller 001 (SIAM J. Matrix Anal. Appl., 2007)

3-D Electrical Impedance Tomography for Piecewise Constant Domains With Known Internal Boundaries. - Saeed Babaeizadeh; Dana H. Brooks; David Isaacson (IEEE Trans. Biomed. Eng., 2007)

Methods of Solving Reduced Lead Systems for Inverse Electrocardiography. - Alireza Ghodrati; Dana H. Brooks; Robert S. MacLeod (IEEE Trans. Biomed. Eng., 2007)

Electrical Impedance Tomography for Piecewise Constant Domains Using Boundary Element Shape-Based Inverse Solutions. - Saeed Babaeizadeh; Dana H. Brooks (IEEE Trans. Medical Imaging, 2007)

A Statistical Approach to Inverting the Born Ratio. - Damon Hyde; Eric L. Miller 001; Dana H. Brooks; Vasilis Ntziachristos (IEEE Trans. Medical Imaging, 2007)

RLS-grappa: Reconstructing parallel MRI data with adaptive filters. - William Scott Hoge; Fernando Gallego; Zhikui Xiao; Dana H. Brooks (ISBI, 2008)

New techniques for data fusion in multimodal FMT-CT imaging. - Damon Hyde; Eric L. Miller 001; Dana H. Brooks; Vasilis Ntziachristos (ISBI, 2008)

Detection of the dermis/epidermis boundary in reflectance confocal images using multi-scale classifier with adaptive texture features. - Sila Kurugol; Jennifer G. Dy; Milind Rajadhyaksha; Dana H. Brooks (ISBI, 2008)

Estimation and Statistical Bounds for Three-Dimensional Polar Shapes in Diffuse Optical Tomography. - Gregory Boverman; Eric L. Miller 001; Dana H. Brooks; David Isaacson; Qianqian Fang; David A. Boas (IEEE Trans. Medical Imaging, 2008)

Increasing Temporal Resolution in Hybrid 3D EPI fMRI Studies Using Unfold. - Onur Afacan; William Scott Hoge; Dana H. Brooks; István Ákos Mórocz (ISBI, 2009)

Differential Equation-Driven Regularization for Joint FMT-CT Imaging. - Damon Hyde; Eric L. Miller 001; Dana H. Brooks; Vasilis Ntziachristos (ISBI, 2009)

Localizing the Dermis/Epidermis Boundary in Reflectance Confocal Microscopy Images with a Hybrid Classification Algorithm. - Sila Kurugol; Jennifer G. Dy; Milind Rajadhyaksha; Dana H. Brooks (ISBI, 2009)

Hybrid FMT-CT imaging of amyloid-β plaques in a murine Alzheimer's disease model. - Damon Hyde; Ruben de Kleine; Sarah A. MacLaurin; Eric L. Miller 001; Dana H. Brooks; Thomas Krucker; Vasilis Ntziachristos (NeuroImage, 2009)

Combined Optical Imaging and Mammography of the Healthy Breast: Optical Contrast Derived From Breast Structure and Compression. - Qianqian Fang; Stefan A. Carp; Juliette Selb; Gregory Boverman; Quan Zhang; Daniel B. Kopans; Richard H. Moore; Eric L. Miller 001; Dana H. Brooks; David A. Boas (IEEE Trans. Medical Imaging, 2009)

Locally Deformable Shape Model to Improve 3D Level Set Based Esophagus Segmentation. - Sila Kurugol; Necmiye Ozay; Jennifer G. Dy; Gregory C. Sharp; Dana H. Brooks (ICPR, 2010)

3D level set esophagus segmentation in thoracic CT images using spatial, appearance and shape models. - Sila Kurugol; Jennifer G. Dy; Gregory C. Sharp; Dana H. Brooks (ISBI, 2010)

3D reconstruction for multimodality phase microscopy using boundary detection constraints. - Heidy Sierra; Dana H. Brooks; Charles A. DiMarzio (ISBI, 2010)

Data Specific Spatially Varying Regularization for Multimodal Fluorescence Molecular Tomography. - Damon Hyde; Eric L. Miller 001; Dana H. Brooks; Vasilis Ntziachristos (IEEE Trans. Medical Imaging, 2010)

A toolkit for forward/inverse problems in electrocardiography within the SCIRun problem solving environment. - Brett M. Burton; Jess D. Tate; Burak Erem; Darrell J. Swenson; Dafang Wang; Michael Steffen; Dana H. Brooks; Peter M. van Dam; Robert S. MacLeod (EMBC, 2011)

Spatiotemporal estimation of activation times of fractionated ECGs on complex heart surfaces. - Burak Erem; Dana H. Brooks; Peter M. van Dam; Jeroen G. Stinstra; Rob S. MacLeod (EMBC, 2011)

Analysis of the criteria of activation-based inverse electrocardiography using convex optimization. - Burak Erem; Peter M. van Dam; Dana H. Brooks (EMBC, 2011)

Refractive effects on optical measurement of alveolar volume: A 2-D ray-tracing approach. - Fatemeh Noushin Golabchi; Dana H. Brooks; Andrew Gouldstone; Charles A. DiMarzio (EMBC, 2011)

Centerline extraction with principal curve tracing to improve 3D level set esophagus segmentation in CT images. - Sila Kurugol; Erhan Bas; Deniz Erdogmus; Jennifer G. Dy; Gregory C. Sharp; Dana H. Brooks (EMBC, 2011)

Progress on multimodal molecular / anatomical intravascular imaging of coronary vessels combining near infrared fluorescence and ultrasound. - Georgios Mallas; Amir Rosenthal; Marcella A. Calfon; R. Nika Razansky; Adam Mauskapf; Farouc A. Jaffer; Dana H. Brooks; Vasilis Ntziachristos (EMBC, 2011)

Differential geometric approximation of the gradient and Hessian on a triangulated manifold. - Burak Erem; Dana H. Brooks (ISBI, 2011)

Low-order 4D dynamical modeling of heart motion under respiration. - M. Queralt Madrigal; Gilead Tadmor; G. Crosas Cano; Dana H. Brooks (ISBI, 2011)

Modeling habituation in rat EEG-evoked responses via a neural mass model with feedback. - Srinivas Laxminarayan; Gilead Tadmor; Solomon Gilbert Diamond; Eric L. Miller 001; Maria Angela Franceschini; Dana H. Brooks (Biol. Cybern., 2011)

The challenges of writing portable, correct and high performance libraries for GPUs. - Miriam Leeser; Devon Yablonski; Dana H. Brooks; Laurie A. Smith King (SIGARCH Comput. Archit. News, 2011)

A pipeline for the simulation of transcranial direct current stimulation for realistic human head models using SCIRun/BioMesh3D. - Moritz Dannhauer; Dana H. Brooks; Don M. Tucker; Robert S. MacLeod (EMBC, 2012)

Unsupervised wrinkle detection in reflectance confocal microscopy images of the human skin. - Jamshid Sourati; Dana H. Brooks; Jennifer G. Dy; Esra Ataer Cansizoglu; Deniz Erdogmus; Milind Rajadhyaksha (ICASSP, 2012)

Manifold learning for analysis of low-order nonlinear dynamics in high-dimensional electrocardiographic signals. - Burak Erem; Petr Stovícek; Dana H. Brooks (ISBI, 2012)

Axon segmentation in microscopy images - A graphical model based approach. - F. Noushin Golabchi; Dana H. Brooks (ISBI, 2012)

Constrained spectral clustering for image segmentation. - Jamshid Sourati; Dana H. Brooks; Jennifer G. Dy; Deniz Erdogmus (MLSP, 2012)

Uncertainty Visualization in Forward and Inverse Cardiac Models. - Brett M. Burton; Burak Erem; Kristin Potter; Paul Rosen 001; Chris R. Johnson 001; Dana H. Brooks; Rob S. MacLeod (CinC, 2013)

An Inverse Spectral Method to Localize Discordant Alternans Regions on the Heart from Body Surface Measurements. - Jaume Coll-Font; Burak Erem; Alain Karma; Dana H. Brooks (FIMH, 2013)

Time invariant multi electrode averaging for biomedical signals. - Ramon Martinez Orellana; Burak Erem; Dana H. Brooks (ICASSP, 2013)

Guest Editorial Special Issue on Medical Imaging and Image Computing in Computational Physiology. - Alejandro F. Frangi; Rod D. Hose; Peter J. Hunter; Nicholas Ayache; Dana H. Brooks (IEEE Trans. Medical Imaging, 2013)

Utilization of temporal trial dependency in ERP based BCIs. - Umut Orhan; Delia Fernandez-Canellas; Murat Akçakaya; Dana H. Brooks; Deniz Erdogmus (ACSSC, 2014)

New Additions to the Toolkit for Forward/Inverse Problems in Electrocardiography within the SCIRun Problem Solving Environment. - Jaume Coll-Font; Brett M. Burton; Jess D. Tate; Burak Erem; Darrell J. Swenson; Dafang Wang; Dana H. Brooks; Peter M. van Dam; Rob S. MacLeod (CinC, 2014)

Using a new Time-Independent Average Method for Non-Invasive Cardiac Potential Imaging of Endocardial Pacing with Imprecise Thorax Geometry. - Jaume Coll-Font; Burak Erem; Petr Stovícek; Dana H. Brooks (CinC, 2014)

Visualizing simulated electrical fields from electroencephalography and transcranial electric brain stimulation: A comparative evaluation. - Sebastian Eichelbaum; Moritz Dannhauer; Mario Hlawitschka; Dana H. Brooks; Thomas R. Knösche; Gerik Scheuermann (NeuroImage, 2014)

Accelerated Learning-Based Interactive Image Segmentation Using Pairwise Constraints. - Jamshid Sourati; Deniz Erdogmus; Jennifer G. Dy; Dana H. Brooks (IEEE Trans. Image Process., 2014)

Using Transmural Regularization and Dynamic Modeling for Noninvasive Cardiac Potential Imaging of Endocardial Pacing With Imprecise Thoracic Geometry. - Burak Erem; Jaume Coll-Font; Ramon Martinez Orellana; Petr Stovícek; Dana H. Brooks (IEEE Trans. Medical Imaging, 2014)

Identifying Model Inaccuracies and Solution Uncertainties in Noninvasive Activation-Based Imaging of Cardiac Excitation Using Convex Relaxation. - Burak Erem; Peter M. van Dam; Dana H. Brooks (IEEE Trans. Medical Imaging, 2014)

Comparison of Temporal Dimensionality Reduction Methods for Constrained Inverse in Cardiac Electrical Imaging. - Jaume Coll-Font; Danila Potyagaylo; Walther H. W. Schulze; Olaf Dössel; Dana H. Brooks (CinC, 2015)

Evaluation of 2-norm versus Sparsity Regularization in Spline-Based Joint Reconstruction of Epicardial and Endocardial Potentials from Body-Surface Measurements. - Jaume Coll-Font; Brittany Purcell; Jingjia Xu; Petr Stovícek; Dana H. Brooks; Linwei Wang (CinC, 2015)

Quantitative Comparison of Two Cardiac Electrical Imaging Methods to Localize Pacing Sites. - Jaume Coll-Font; Petr Stovícek; Dana H. Brooks; Peter M. van Dam (CinC, 2015)

A statistical approach to incorporate multiple ECG or EEG recordings with artifactual variability into inverse solutions. - Jaume Coll-Font; Burak Erem; Petr Stovícek; Dana H. Brooks (ISBI, 2015)

Combined delay and graph embedding of epileptic discharges in EEG reveals complex and recurrent nonlinear dynamics. - Burak Erem; Damon Hyde; Jurriaan M. Peters; Frank H. Duffy; Dana H. Brooks; Simon K. Warfield (ISBI, 2015)

A sparse nonnegative demixing algorithm with intrinsic regularization for multiplexed fluorescence tomography. - Vivian Pera; Dana H. Brooks; Mark Niedre (ISBI, 2015)

Maximum a posteriori estimation of relative abundances of protein conformations. - A. Emre Onuk; Murat Akçakaya; Jaydeep P. Bardhan; Deniz Erdogmus; Dana H. Brooks; Lee Makowski (MLSP, 2015)

Constrained Maximum Likelihood Estimation of Relative Abundances of Protein Conformation in a Heterogeneous Mixture From Small Angle X-Ray Scattering Intensity Measurements. - A. Emre Onuk; Murat Akçakaya; Jaydeep P. Bardhan; Deniz Erdogmus; Dana H. Brooks; Lee Makowski (IEEE Trans. Signal Process., 2015)

Spatiotemporal Activation Time Estimation Improves Noninvasive Localization of Cardiac Electrical Activity. - Matthijs J. M. Cluitmans; Jaume Coll-Font; Burak Erem; Dana H. Brooks; Pietro Bonizzi; Joël M. H. Karel; Paul G. A. Volders; Ralf Peeters; Ronald L. Westra (CinC, 2016)

The Consortium on Electrocardiographic Imaging. - Jaume Coll-Font; Dana H. Brooks; Peter M. van Dam; Jwala Dhamala; Olaf Dössel; María de la Salud Guillem Sánchez; Rob S. MacLeod; Danila Potyagaylo; Walther H. W. Schulze; Jess D. Tate; Linwei Wang (CinC, 2016)

Novel Biomarker for Evaluating Ischemic Stress Using an Electrogram Derived Phase Space. - Wilson Good; Burak Erem; Jaume Coll-Font; Dana H. Brooks; Rob S. MacLeod (CinC, 2016)

Optimizing stimulus patterns for dense array TDCS with fewer sources than electrodes using a branch and bound algorithm. - Seyhmus Guler; Moritz Dannhauer; Burak Erem; Robert S. MacLeod; Don M. Tucker; Sergei Turovets; Phan Luu; Waleed Meleis; Dana H. Brooks (ISBI, 2016)

Evaluation of numerical techniques for solving the current injection problem in biological tissues. - Damon E. Hyde; Moritz Dannhauer; Simon K. Warfield; Rob S. MacLeod; Dana H. Brooks (ISBI, 2016)

A framework to optimize protein structure from solution scattering using ADMM and an elastic subdomain network. - Biel Roig-Solvas; Jaydeep P. Bardhan; Deniz Erdogmus; Dana H. Brooks; Lee Makowski (ISBI, 2016)

ECG-Based Reconstruction of Heart Position and Orientation with Bayesian Optimization. - Jaume Coll-Font; Dana H. Brooks (CinC, 2017)

Overcoming Barriers to Quantification and Comparison of Electrocardiographic Imaging Methods: a Community-Based Approach. - Jwala Dhamala; Jaume Coll-Font; Jess D. Tate; María de la Salud Guillem Sánchez; Dana H. Brooks; Linwei Wang; Rob S. MacLeod; Sandesh Ghimire (CinC, 2017)

Detecting Ischemic Stress to the Myocardium Using Laplacian Eigenmaps and Changes to Conduction Velocity. - Wilson Good; Burak Erem; Jaume Coll-Font; Dana H. Brooks; Rob S. MacLeod (CinC, 2017)

Analyzing Source Sampling to Reduce Error in ECG Forward Simulations. - Jess D. Tate; Karli Gillette; Brett M. Burton; Wilson Good; Jaume Coll-Font; Dana H. Brooks; Rob S. MacLeod (CinC, 2017)

Delineation of Skin Strata in Reflectance Confocal Microscopy Images with Recurrent Convolutional Networks. - Alican Bozkurt; Trevor Gale; Kivanç Köse; Christi Alessi-Fox; Dana H. Brooks; Milind Rajadhyaksha; Jennifer G. Dy (CVPR Workshops, 2017)

Delineation of Skin Strata in Reflectance Confocal Microscopy Images using Recurrent Convolutional Networks with Toeplitz Attention. - Alican Bozkurt; Kivanç Köse; Jaume Coll-Font; Christi Alessi-Fox; Dana H. Brooks; Jennifer G. Dy; Milind Rajadhyaksha (CoRR, 2017)

A Marked Poisson Process Driven Latent Shape Model for 3D Segmentation of Reflectance Confocal Microscopy Image Stacks of Human Skin. - Sindhu Ghanta; Michael I. Jordan; Kivanç Köse; Dana H. Brooks; Milind Rajadhyaksha; Jennifer G. Dy (IEEE Trans. Image Process., 2017)

A Common-Ground Review of the Potential for Machine Learning Approaches in Electrocardiographic Imaging Based on Probabilistic Graphical Models. - Jaume Coll-Font; Linwei Wang; Dana H. Brooks (CinC, 2018)

Novel Metric Using Laplacian Eigenmaps to Evaluate Ischemic Stress on the Torso Surface. - Wilson Good; Burak Erem; Jaume Coll-Font; Brian Zenger; Dana H. Brooks; Rob S. MacLeod; Milan Horacek (CinC, 2018)

Effect of Segmentation Variation on ECG Imaging. - Jess D. Tate; Nejib Zemzemi; Wilson Good; Peter M. van Dam; Dana H. Brooks; Rob S. MacLeod (CinC, 2018)

A Multiresolution Convolutional Neural Network with Partial Label Training for Annotating Reflectance Confocal Microscopy Images of Skin. - Alican Bozkurt; Kivanç Köse; Christi Alessi-Fox; Melissa Gill; Jennifer G. Dy; Dana H. Brooks; Milind Rajadhyaksha (MICCAI (2), 2018)

A Multiresolution Deep Learning Framework for Automated Annotation of Reflectance Confocal Microscopy Images. - Kivanç Köse; Alican Bozkurt; Christi Alessi-Fox; Melissa Gill; Dana H. Brooks; Jennifer G. Dy; Milind Rajadhyaksha (CoRR, 2018)

Can VAEs Generate Novel Examples? - Alican Bozkurt; Babak Esmaeili 001; Dana H. Brooks; Jennifer G. Dy; Jan-Willem van de Meent (CoRR, 2018)

Computationally optimized ECoG stimulation with local safety constraints. - Seyhmus Guler; Moritz Dannhauer; Biel Roig-Solvas; Alexis Gkogkidis; Robert S. MacLeod; Tonio Ball; Jeffrey G. Ojemann; Dana H. Brooks (NeuroImage, 2018)

A Potential-Based Inverse Spectral Method to Noninvasively Localize Discordant Distributions of Alternans on the Heart From the ECG. - Jaume Coll-Font; Burak Erem; Dana H. Brooks (IEEE Trans. Biomed. Eng., 2018)

Dirichlet Priors for MAP Inference of Protein Conformation Abundances from SAXS. - A. Emre Onuk; Murat Akçakaya; Jaydeep P. Bardhan; Deniz Erdogmus; Dana H. Brooks; Lee Makowski (J. Signal Process. Syst., 2018)

Structured Disentangled Representations. - Babak Esmaeili 001; Hao Wu 020; Sarthak Jain; Alican Bozkurt; N. Siddharth 001; Brooks Paige; Dana H. Brooks; Jennifer G. Dy; Jan-Willem van de Meent (AISTATS, 2019)

Comparison of Activation Times Estimation for Potential-Based ECG Imaging. - Matthias Schaufelberger; Steffen Schuler; Laura Bear; Matthijs J. M. Cluitmans; Jaume Coll-Font; Önder Nazim Onak; Olaf Dössel; Dana H. Brooks (CinC, 2019)

Removing TMS Artifacts from EEG Recordings Using a Deep Gated Recurrent Unit. - Andac Demir; Mathew Yarossi; Damon Hyde; Mouhsin Shafi; Dana H. Brooks; Deniz Erdogmus (NER, 2019)

Transfer learning using low-dimensional subspaces for EMG-based classification of hand posture. - Sezen Yagmur Günay; Mathew Yarossi; Dana H. Brooks; Eugene Tunik; Deniz Erdogmus (NER, 2019)

An experimental and computational framework for modeling multi-muscle responses to transcranial magnetic stimulation of the human motor cortex. - Mathew Yarossi; Fernando Quivira; Moritz Dannhauer; Marc A. Sommer; Dana H. Brooks; Deniz Erdogmus; Eugene Tunik (NER, 2019)

Evaluating Combinatorial Generalization in Variational Autoencoders. - Alican Bozkurt; Babak Esmaeili 001; Dana H. Brooks; Jennifer G. Dy; Jan-Willem van de Meent (CoRR, 2019)

ADMMBO: Bayesian Optimization with Unknown Constraints using ADMM. - Setareh Ariafar; Jaume Coll-Font; Dana H. Brooks; Jennifer G. Dy (J. Mach. Learn. Res., 2019)

Prospects for transcranial temporal interference stimulation in humans: A computational study. - Sumientra Rampersad; Biel Roig-Solvas; Mathew Yarossi; Praveen P. Kulkarni 001; Emiliano Santarnecchi; Alan D. Dorval; Dana H. Brooks (NeuroImage, 2019)

A Proximal Operator for Multispectral Phase Retrieval Problems. - Biel Roig-Solvas; Lee Makowski; Dana H. Brooks (SIAM J. Optim., 2019)

Improving Localization of Cardiac Geometry Using ECGI. - Jake A. Bergquist; Jaume Coll-Font; Brian Zenger; Lindsay C. Rupp; Wilson W. Good; Dana H. Brooks; Rob S. MacLeod (CinC, 2020)

Using UncertainSCI to Quantify Uncertainty in Cardiac Simulations. - Lindsay C. Rupp; Zexin Liu; Jake A. Bergquist; Sumientra Rampersad; Dan White; Jess D. Tate; Dana H. Brooks; Akil Narayan 001; Rob S. MacLeod (CinC, 2020)

Shape Analysis of Segmentation Variability. - Jess D. Tate; Nejib Zemzemi; Wilson W. Good; Peter M. van Dam; Dana H. Brooks; Rob S. MacLeod (CinC, 2020)

A Muscle Synergy Framework for Cross-Limb Reconstruction of Hand Muscle Activity Distal to a Virtual Wrist-Level Disarticulation. - Spencer Lake Jacobs-Skolik; Don Liang; Dana H. Brooks; Deniz Erdogmus; Mathew Yarossi; Eugene Tunik (EMBC, 2020)

Mapping motor cortex stimulation to muscle responses: a deep neural network modeling approach. - Md Navid Akbar; Mathew Yarossi; Marc Martinez-Gost; Marc A. Sommer; Moritz Dannhauer; Sumientra Rampersad; Dana H. Brooks; Eugene Tunik; Deniz Erdogmus (PETRA, 2020)

Motor cortex mapping using active gaussian processes. - Razieh Faghihpirayesh; Tales Imbiriba; Mathew Yarossi; Eugene Tunik; Dana H. Brooks; Deniz Erdogmus (PETRA, 2020)

Characterizing the transient electrocardiographic signature of ischemic stress using Laplacian Eigenmaps for dimensionality reduction. - Wilson W. Good; Burak Erem; Brian Zenger; Jaume Coll-Font; Jake A. Bergquist; Dana H. Brooks; Rob S. MacLeod (Comput. Biol. Medicine, 2020)

Weighting Is Worth the Wait: Bayesian Optimization with Importance Sampling. - Setareh Ariafar; Zelda Mariet; Ehsan Elhamifar; Dana H. Brooks; Jennifer G. Dy; Jasper Snoek (CoRR, 2020)

Faster & More Reliable Tuning of Neural Networks: Bayesian Optimization with Importance Sampling. - Setareh Ariafar; Zelda Mariet; Dana H. Brooks; Jennifer G. Dy; Jasper Snoek (AISTATS, 2021)

Rate-Regularization and Generalization in Variational Autoencoders. - Alican Bozkurt; Babak Esmaeili 001; Jean-Baptiste Tristan; Dana H. Brooks; Jennifer G. Dy; Jan-Willem van de Meent (AISTATS, 2021)

Relationship Between Cardiac Isochrones and its Mean Anatomical Position in the Heart: The CineECG. - Machteld J. Boonstra; Dana H. Brooks; Peter Loh; Peter M. van Dam (CinC, 2021)

A Cardiac Shape Model for Segmentation Uncertainty Quantification. - Jess D. Tate; Shireen Y. Elhabian; Nejib Zemzemi; Wilson W. Good; Peter M. van Dam; Dana H. Brooks; Rob S. MacLeod (CinC, 2021)

Variation is the Norm: Brain State Dynamics Evoked By Emotional Video Clips. - Ashutosh Singh; Christiana Westlin; Hedwig Eisenbarth; Elizabeth A. Reynolds Losin; Jessica R. Andrews-Hanna; Tor D. Wager; Ajay B. Satpute; Lisa Feldman Barrett; Dana H. Brooks; Deniz Erdogmus (EMBC, 2021)

Simultaneous Multi-heartbeat ECGI Solution with a Time-Varying Forward Model: A Joint Inverse Formulation. - Jake A. Bergquist; Jaume Coll-Font; Brian Zenger; Lindsay C. Rupp; Wilson W. Good; Dana H. Brooks; Rob S. MacLeod (FIMH, 2021)

Uncertainty Quantification of the Effects of Segmentation Variability in ECGI. - Jess D. Tate; Wilson W. Good; Nejib Zemzemi; Machteld J. Boonstra; Peter M. van Dam; Dana H. Brooks; Akil Narayan 001; Rob S. MacLeod (FIMH, 2021)

Deep Adaptive Electrocardiographic Imaging with Generative Forward Model for Error Reduction. - Maryam Toloubidokhti; Prashnna K. Gyawali; Omar A. Gharbia; Xiajun Jiang; Jaume Coll-Font; Jake A. Bergquist; Brian Zenger; Wilson W. Good; Dana H. Brooks; Rob S. MacLeod; Linwei Wang (FIMH, 2021)

Unsupervised Approaches for Out-Of-Distribution Dermoscopic Lesion Detection. - Max Torop; Sandesh Ghimire; WenQian Liu; Dana H. Brooks; Octavia I. Camps; Milind Rajadhyaksha; Jennifer G. Dy; Kivanç Köse (CoRR, 2021)

Segmentation of cellular patterns in confocal images of melanocytic lesions in vivo via a multiscale encoder-decoder network (MED-Net). - Kivanç Köse; Alican Bozkurt; Christi Alessi-Fox; Melissa Gill; Caterina Longo; Giovanni Pellacani; Jennifer G. Dy; Dana H. Brooks; Milind Rajadhyaksha (Medical Image Anal., 2021)

Heart Position Uncertainty Quantification in the Inverse Problem of ECGI. - Jake A. Bergquist; Lindsay C. Rupp; Anna Busatto; Ben Orkild; Brian Zenger; Wilson Good; Jaume Coll-Font; Akil Narayan 001; Jess D. Tate; Dana H. Brooks; Rob S. MacLeod (CinC, 2022)

Effect of Segmentation Uncertainty on the ECGI Inverse Problem Solution and Source Localization. - Narimane Gassa; Machteld J. Boonstra; Beata Ondrusova; Jana Svehlíková; Dana H. Brooks; Akil Narayan 001; Ali S. Rababah; Peter M. van Dam; Rob S. MacLeod; Jess D. Tate; Nejib Zemzemi (CinC, 2022)

The Effect of Segmentation Variability in Forward ECG Simulation. - Beata Ondrusova; Machteld J. Boonstra; Jana Svehlíková; Dana H. Brooks; Peter M. van Dam; Ali S. Rababah; Akil Narayan 001; Rob S. MacLeod; Nejib Zemzemi; Jess D. Tate (CinC, 2022)

Segmentation Uncertainty Quantification in Cardiac Propagation Models. - Jess D. Tate; Nejib Zemzemi; Shireen Y. Elhabian; Beáta Ondrusová; Machteld J. Boonstra; Peter M. van Dam; Akil Narayan 001; Dana H. Brooks; Rob S. MacLeod (CinC, 2022)

Reconstruction of cardiac position using body surface potentials. - Jake A. Bergquist; Jaume Coll-Font; Brian Zenger; Lindsay C. Rupp; Wilson W. Good; Dana H. Brooks; Rob S. MacLeod (Comput. Biol. Medicine, 2022)

CineECG: A novel method to image the average activation sequence in the heart from the 12-lead ECG. - Machteld J. Boonstra; Dana H. Brooks; Peter Loh; Peter M. van Dam (Comput. Biol. Medicine, 2022)

Reducing Line-of-Block Artifacts in Cardiac Activation Maps Estimated Using ECG Imaging: A Comparison of Source Models and Estimation Methods. - Steffen Schuler; Matthias Schaufelberger; Laura R. Bear; Jake A. Bergquist; Matthijs J. M. Cluitmans; Jaume Coll-Font; Önder Nazim Onak; Brian Zenger; Axel Loewe; Rob S. MacLeod; Dana H. Brooks; Olaf Dössel (IEEE Trans. Biomed. Eng., 2022)

AlignGraph: A Group of Generative Models for Graphs. - Kimia Shayestehfard; Dana H. Brooks; Stratis Ioannidis (SDM, 2023)

UncertainSCI: Uncertainty quantification for computational models in biomedicine and bioengineering. - Akil Narayan 001; Zexin Liu; Jake A. Bergquist; Chantel Charlebois; Sumientra Rampersad; Lindsay C. Rupp; Dana H. Brooks; Dan White; Jess D. Tate; Rob S. MacLeod (Comput. Biol. Medicine, 2023)

UncertainSCI: A Python Package for Noninvasive Parametric Uncertainty Quantification of Simulation Pipelines. - Jess D. Tate; Zexin Liu; Jake A. Bergquist; Sumientra Rampersad; Dan White; Chantel Charlebois; Lindsay C. Rupp; Dana H. Brooks; Rob S. MacLeod; Akil Narayan 001 (J. Open Source Softw., 2023)