The Effect of Bacterial Recombination on Adaptation on Fitness Landscapes with Limited Peak Accessibility. - Danesh Moradigaravand; Jan Engelstädter (PLoS Comput. Biol., 2012)

Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data. - Danesh Moradigaravand; Martin Palm; Anne Farewell; Ville Mustonen; Jonas Warringer; Leopold Parts (PLoS Comput. Biol., 2018)

ChemGAPP: a tool for chemical genomics analysis and phenotypic profiling. - Hannah M. Doherty; George Kritikos; Marco Galardini; Manuel Banzhaf; Danesh Moradigaravand (Bioinform., 2023)