DeepDrugmiR: a two-stage deep learning method for inferring small molecules' regulatory effects on microRNA expression. - Yixian Huang; Huacong Wu; Ying Cai; Danhong Dong; Sicong Yu; Yigang Chen 001; Zihao Zhu; Yang-Chi-Dung Lin; Hsien-Da Huang; Hsi-Yuan Huang (BCB, 2024)

DrugRepoBank: a comprehensive database and discovery platform for accelerating drug repositioning. - Yixian Huang; Danhong Dong; Wenyang Zhang; Ruiting Wang; Yang-Chi-Dung Lin; Hua-Li Zuo; Hsi-Yuan Huang; Hsien-Da Huang (Database J. Biol. Databases Curation, 2024)

StackDILI: Enhancing Drug-Induced Liver Injury Prediction through Stacking Strategy with Effective Molecular Representations. - Jiahui Guan; Danhong Dong; Peilin Xie; Zhihao Zhao; Yilin Guo; Tzong-Yi Lee; Lantian Yao; Ying-Chih Chiang (J. Chem. Inf. Model., 2025)