MoBaS on Phosphorylation Data. - Marzieh Ayati; Danica Wiredja; Daniela Schlatzer; Goutham Narla; Mark R. Chance; Mehmet Koyutürk (BCB, 2016)

The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics. - Danica Wiredja; Mehmet Koyutürk; Mark R. Chance (Bioinform., 2017)

CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis. - Marzieh Ayati; Danica Wiredja; Daniela Schlatzer; Sean Maxwell; Ming Li 022; Mehmet Koyutürk; Mark R. Chance (PLoS Comput. Biol., 2019)