Ribosome occupancy profiles are conserved between structurally and evolutionarily related yeast domains. - Daniel A. Nissley; Anna Carbery; Mark Chonofsky; Charlotte M. Deane (Bioinform., 2021)

Current structure predictors are not learning the physics of protein folding. - Carlos Outeiral; Daniel A. Nissley; Charlotte M. Deane (Bioinform., 2022)

Computationally profiling peptide:MHC recognition by T-cell receptors and T-cell receptor-mimetic antibodies. - Matthew I. J. Raybould; Daniel A. Nissley; Sandeep Kumar; Charlotte M. Deane (Zenodo, 2022)

Computationally profiling peptide:MHC recognition by T-cell receptors and T-cell receptor-mimetic antibodies. - Matthew I. J. Raybould; Daniel A. Nissley; Sandeep Kumar; Charlotte M. Deane (Zenodo, 2022)

ABodyBuilder3: Improved and scalable antibody structure predictions. - Henry Kenlay; Frédéric A. Dreyer; Daniel Cutting; Daniel A. Nissley; Charlotte M. Deane (CoRR, 2024)