TranScout: prediction of gene expression regulatory proteins from their sequences. - Daniel Aguilar; Baldomero Oliva; Francesc X. Avilés; Enrique Querol (Bioinform., 2002)

SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names. - Daniel Aguilar; Baldomero Oliva; Francesc X. Avilés; Enrique Querol (Bioinform., 2003)

On the Analysis of the Intersection of the Interactome and the Metabolome. - Joan Planas-Iglesias; Daniel Aguilar; Baldomero Oliva (Spanish Bioinformatics Conference, 2004)

TrSDB: a proteome database of transcription factors. - Antonio Hermoso; Daniel Aguilar; Francesc X. Avilés; Enrique Querol (Nucleic Acids Res., 2004)