Evaluation of high-throughput isomiR identification tools: illuminating the early isomiRome of Tribolium castaneum. - Daniel Amsel; Andreas Vilcinskas; André Billion (BMC Bioinform., 2017)

microPIECE - microRNA pipeline enhanced by CLIP experiments. - Daniel Amsel; André Billion; Andreas Vilcinskas; Frank Förster (J. Open Source Softw., 2018)

MOTH: Memory-Efficient On-the-Fly Tiling of Histological Image Annotations Using QuPath. - Thomas Kauer; Jannik Sehring; Kai Schmid; Marek Bartkuhn; Benedikt Wiebach; Slaven Crnkovic; Grazyna Kwapiszewska; Till Acker; Daniel Amsel (J. Imaging, 2024)