Predicting miRNA targets utilizing an Extended Profile HMM. - Jan Grau; Daniel Arend; Ivo Grosse; Artemis G. Hatzigeorgiou; Jens Keilwagen; Manolis Maragkakis; Claus Weinholdt; Stefan Posch (GCB, 2010)

The e!DAL JAVA-API: Store, share and cite primary data in life sciences. - Daniel Arend; Matthias Lange 001; Christian Colmsee; Steffen Flemming; Jinbo Chen; Uwe Scholz (BIBM, 2012)

Data Management Experiences and Best Practices from the Perspective of a Plant Research Institute. - Daniel Arend; Christian Colmsee; Helmut Knüpffer; Markus Oppermann; Uwe Scholz; Danuta Schüler; Stephan Weise; Matthias Lange 001 (DILS, 2014)

e!DAL - a framework to store, share and publish research data. - Daniel Arend; Matthias Lange 001; Jinbo Chen; Christian Colmsee; Steffen Flemming; Denny Hecht; Uwe Scholz (BMC Bioinform., 2014)

PGP repository: a plant phenomics and genomics data publication infrastructure. - Daniel Arend; Astrid Junker; Uwe Scholz; Danuta Schüler; Juliane Wylie; Matthias Lange 001 (Database J. Biol. Databases Curation, 2016)

Programmatic Access to FAIRified Digital Plant Genetic Resources. - Mehmood Ghaffar; Danuta Schüler; Patrick König; Daniel Arend; Astrid Junker; Uwe Scholz; Matthias Lange 001 (J. Integr. Bioinform., 2019)

Nachhaltige Infrastruktur zur Forschungsdatenpublikation am Beispiel von Hochdurchsatz-Pflanzenphänotypisierungsdaten. - Daniel Arend (2019)

isa4j: a scalable Java library for creating ISA-Tab metadata. - Dennis Psaroudakis; Feng Liu; Patrick König; Uwe Scholz; Astrid Junker; Matthias Lange 001; Daniel Arend (F1000Research, 2020)

Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. - Gerhard Mayer; Wolfgang Müller 001; Karin Schork; Julian Uszkoreit; Andreas Weidemann; Ulrike Wittig; Maja Rey; Christian Quast; Janine Felden; Frank Oliver Glöckner; Matthias Lange 001; Daniel Arend; et al. (Briefings Bioinform., 2021)

On the way to plant data commons - a genotyping use case. - Manuel Feser; Patrick König; Anne Fiebig; Daniel Arend; Matthias Lange 001; Uwe Scholz (J. Integr. Bioinform., 2022)

Schema.org as a Lightweight Harmonization Approach for NFDI. - Leyla Jael Castro; Juliane Fluck; Daniel Arend; Matthias Lange 001; Daniel Martini; Steffen Neumann; Sonja Schimmler; Dietrich Rebholz-Schuhmann (CoRDI, 2023)

FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung. - Xenia Specka; Daniel Martini; Claus Weiland; Daniel Arend; Senthold Asseng; Franziska Boehm; Til Feike; Juliane Fluck; David Gackstetter; Aida Gonzales-Mellado; Thomas Hartmann; Jan-Henrik Haunert; et al. (Inform. Spektrum, 2023)

A roadmap for a middleware as a federation service for integrative data retrieval of agricultural data. - Jorge García Brizuela; Carsten Scharfenberg; Carmen Scheuner; Florian Hoedt; Patrick König; Angela Kranz; Antonia Leidel; Daniel Martini; Gabriel Schneider; Julian Schneider; Lea Sophie Singson; Harald von Waldow; et al. (J. Integr. Bioinform., 2024)

Data management in balance - a decade of balancing pragmatism, sustainability and innovation at plant research center IPK Gatersleben. - Danuta Schüler; Matthias Lange 001; Thomas Altmann; Maria Cuacos; Daniel Arend; John Charles D'Auria; Anne Fiebig; Jochen Kumlehn; Kerstin Neumann; Michael Melzer; Elena Rey-Mazón; Hardy Rolletschek; et al. (J. Integr. Bioinform., 2025)