Sausage: protein threading with flexible force fields. - Thomas Huber; Anthony J. Russell; Daniel Ayers; Andrew Ernest Torda (Bioinform., 1999)

A second generation computer forensic analysis system. - Daniel Ayers (Digit. Investig., 2009)

Deconstructed Trustee Theory: Disentangling Trust in Body and Identity in Multi-Robot Distributed Systems. - Tom Williams 001; Daniel Ayers; Camille Kaufman; Jon Serrano; Sayanti Roy (HRI, 2021)