Recommendations for the packaging and containerizing of bioinformatics software. - Björn A. Grüning; Olivier Sallou; Pablo A. Moreno; Felipe da Veiga Leprevost; Hervé Ménager; Dan Søndergaard; Hannes L. Röst; Timo Sachsenberg; Brian O'Connor; Fábio Madeira; Victoria Dominguez Del Angel; Michael R. Crusoe; et al. (F1000Research, 2018)

Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks. - Nicola Apollonio; Daniel Blankenberg; Fabio Cumbo; Paolo Giulio Franciosa; Daniele Santoni (Bioinform., 2023)

CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online. - Marie Macnee; Eduardo Pérez-Palma; Tobias Brünger; Chiara Klöckner; Konrad Platzer; Arthur Stefanski; Ludovica Montanucci; Allan Bayat; Maximilian Radtke; Ryan L. Collins; Michael E. Talkowski; Daniel Blankenberg; et al. (Bioinform., 2023)

hdlib: A Python library for designing Vector-Symbolic Architectures. - Fabio Cumbo; Emanuel Weitschek; Daniel Blankenberg (J. Open Source Softw., 2023)

Quantum Exploration-based Reinforcement Learning for Efficient Robot Path Planning in Sparse-Reward Environment. - Chao Huang; Yibei Guo; Zhihui Zhu; Mei Si; Daniel Blankenberg; Rui Liu (RO-MAN, 2024)

Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer. - Fabio Cumbo; Simone Truglia; Emanuel Weitschek; Daniel Blankenberg (Briefings Bioinform., 2024)

Towards quantum computing for clinical trial design and optimization: A perspective on new opportunities and challenges. - Hakan Doga; Mustafa Emre Sahin; Joao H. Bettencourt-Silva; Anh Pham; Eunyoung Kim; Alan Andress; Sudhir Saxena; Aritra Bose; Laxmi Parida; Jan Lukas Robertus; Hideaki Kawaguchi; Radwa Soliman; et al. (CoRR, 2024)

Quantum Circuit Optimization for Protein Structure Prediction. - Xinpeng Li; Vinooth Rao Kulkarni; Jai Nana; Shusen Pu; Ning Xie 002; Qiang Guan; Ruihao Li 008; Shulei Zhang; Shuai Xu; Daniel Blankenberg; Vipin Chaudhary (DSN-W, 2025)

How quantum computing can enhance biomarker discovery. - Frederik F. Flöther; Daniel Blankenberg; Maria Demidik; Karl Jansen; Raga Krishnakumar; Rajiv Krishnakumar; Nouamane Laanait; Laxmi Parida; Carl Y. Saab; Filippo Utro (Patterns, 2025)