Clustering the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model. - Alex Ozdemir; Michael Sheely; Daniel Bork; Ricson Cheng; Reyna Hulett; Jean Sung; Jincheng Wang; Ran Libeskind-Hadas (AlCoB, 2017)

On the computational complexity of the maximum parsimony reconciliation problem in the duplication-loss-coalescence model. - Daniel Bork; Ricson Cheng; Jincheng Wang; Jean Sung; Ran Libeskind-Hadas (Algorithms Mol. Biol., 2017)

Improving the performance of minimizers and winnowing schemes. - Guillaume Marçais; David Pellow; Daniel Bork; Yaron Orenstein; Ron Shamir; Carl Kingsford (Bioinform., 2017)