VarScan: variant detection in massively parallel sequencing of individual and pooled samples. - Daniel C. Koboldt; Ken Chen 001; Todd Wylie; David E. Larson; Michael D. McLellan; Elaine R. Mardis; George M. Weinstock; Richard K. Wilson; Li Ding (Bioinform., 2009)

Challenges of sequencing human genomes. - Daniel C. Koboldt; Li Ding; Elaine R. Mardis; Richard K. Wilson (Briefings Bioinform., 2010)

CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data. - Qunyuan Zhang; Li Ding; David E. Larson; Daniel C. Koboldt; Michael D. McLellan; Ken Chen 001; Xiaoqi Shi; Aldi T. Kraja; Elaine R. Mardis; Richard K. Wilson; Ingrid B. Borecki; Michael A. Province (Bioinform., 2010)

SomaticSniper: identification of somatic point mutations in whole genome sequencing data. - David E. Larson; Christopher C. Harris; Ken Chen 001; Daniel C. Koboldt; Travis E. Abbott; David J. Dooling; Timothy J. Ley; Elaine R. Mardis; Richard K. Wilson; Li Ding (Bioinform., 2012)

Genome Modeling System: A Knowledge Management Platform for Genomics. - Malachi Griffith; Obi L. Griffith; Scott M. Smith; Avinash Ramu; Matthew B. Callaway; Anthony M. Brummett; Michael J. Kiwala; Adam C. Coffman; Allison A. Regier; Benjamin J. Oberkfell; Gabriel E. Sanderson; Thomas P. Mooney; et al. (PLoS Comput. Biol., 2015)

Functional annotation of genomic variants in studies of late-onset Alzheimer's disease. - Mariusz Butkiewicz; Elizabeth E. Blue; Yuk Yee Leung; Xueqiu Jian; Edoardo Marcora; Alan E. Renton; Amanda Kuzma; Li-San Wang; Daniel C. Koboldt; Jonathan L. Haines; William S. Bush (Bioinform., 2018)