Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. - Brendan MacLean; Daniela M. Tomazela; Nicholas Shulman; Matthew Chambers; Gregory L. Finney; Barbara Frewen; Randall Kern; David L. Tabb; Daniel C. Liebler; Michael J. MacCoss (Bioinform., 2010)

Enabling proteomics-based identification of human cancer variations. - Jing Li; Zeqiang Ma; Robbert J. C. Slebos; David L. Tabb; Daniel C. Liebler; Bing Zhang 003 (BMC Bioinform., 2010)

Supporting tool suite for production proteomics. - Zeqiang Ma; David L. Tabb; Joseph Burden; Matthew Chambers; Matthew B. Cox; Michael J. Cantrell; Amy-Joan L. Ham; Michael D. Litton; Michael R. Oreto; William C. Schultz; Scott M. Sobecki; Tina Y. Tsui; et al. (Bioinform., 2011)

Bioinformatic challenges for proteomic biomarkers of cancer. - David L. Tabb; Daniel C. Liebler (BMC Bioinform., 2011)

Co-expression network analysis identifies Spleen Tyrosine Kinase (SYK) as a candidate oncogenic driver in a subset of small-cell lung cancer. - Akshata R. Udyavar; Megan D. Hoeksema; Jonathan E. Clark; Yong Zou; Zuojian Tang; Zhiguo Li; Ming Li 022; Heidi Chen; Alexander R. Statnikov; Yu Shyr; Daniel C. Liebler; John K. Field; et al. (BMC Syst. Biol., 2013)

Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates. - Dong Wang; Surendra Dasari; Matthew Chambers; Jerry D. Holman; Kan Chen; Daniel C. Liebler; Daniel J. Orton; Samuel O. Purvine; Matthew E. Monroe; Chang Y. Chung; Kristie L. Rose; David L. Tabb (Genom. Proteom. Bioinform., 2013)