OSLay: optimal syntenic layout of unfinished assemblies. - Daniel C. Richter; Stephan C. Schuster; Daniel H. Huson (Bioinform., 2007)

Dendroscope: An interactive viewer for large phylogenetic trees. - Daniel H. Huson; Daniel C. Richter; Christian Rausch; Tobias Dezulian; Markus Franz; Regula Rupp (BMC Bioinform., 2007)

Methods for comparative metagenomics. - Daniel H. Huson; Daniel C. Richter; Suparna Mitra; Alexander F. Auch; Stephan C. Schuster (BMC Bioinform., 2009)

Algorithms and tools for genome assembly and metagenome analysis. - Daniel C. Richter (2009)

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. - Suparna Mitra; Paul Rupek; Daniel C. Richter; Tim Urich; Jack A. Gilbert; Folker Meyer; Andreas Wilke; Daniel H. Huson (BMC Bioinform., 2011)