MKVPCI: a computer program for Markov models with piecewise constant intensities and covariates. - Ahmadou Alioum; Daniel Commenges (Comput. Methods Programs Biomed., 2001)

Bivariate linear mixed models using SAS proc MIXED. - Rodolphe Thiébaut; Hélène Jacqmin-Gadda; Geneviève Chêne; Catherine Leport; Daniel Commenges (Comput. Methods Programs Biomed., 2002)

Selection between proportional and stratified hazards models based on expected log-likelihood. - Benoit Liquet; Jérôme Saracco; Daniel Commenges (Comput. Stat., 2007)

Inference in HIV dynamics models via hierarchical likelihood. - Daniel Commenges; D. Jolly; Julia Drylewicz; Hein Putter; Rodolphe Thiébaut (Comput. Stat. Data Anal., 2011)

NIMROD: A program for inference via a normal approximation of the posterior in models with random effects based on ordinary differential equations. - Mélanie Prague; Daniel Commenges; Jérémie Guedj; Julia Drylewicz; Rodolphe Thiébaut (Comput. Methods Programs Biomed., 2013)

Erratum to "NIMROD: A program for inference via normal approximation of the posterior in models with random effects based on ordinary differential equations" [Comput. Methods Programs Biomed. 111 (2) (2013) 447-458]. - Mélanie Prague; Daniel Commenges; Jérémie Guedj; Julia Drylewicz; Rodolphe Thiébaut (Comput. Methods Programs Biomed., 2014)

Quantifying and Predicting the Effect of Exogenous Interleukin-7 on CD4+T Cells in HIV-1 Infection. - Rodolphe Thiébaut; Julia Drylewicz; Mélanie Prague; Christine Lacabaratz; Stéphanie Beq; Ana Jarne; Thérèse Croughs; Rafick-Pierre Sekaly; Michael M. Lederman; Irini Sereti; Daniel Commenges; Yves Lévy (PLoS Comput. Biol., 2014)

Robust and Efficient Optimization Using a Marquardt-Levenberg Algorithm with R Package marqLevAlg. - Viviane Philipps; Boris P. Hejblum; Mélanie Prague; Daniel Commenges; Cécile Proust-Lima (R J., 2021)