Minimus: a fast, lightweight genome assembler. - Daniel D. Sommer; Arthur L. Delcher; Steven L. Salzberg; Mihai Pop (BMC Bioinform., 2007)

Comprehensive DNA Signature Discovery and Validation. - Adam M. Phillippy; Jacquline A. Mason; Kunmi Ayanbule; Daniel D. Sommer; Elisa Taviani; Anwar Huq; Rita R. Colwell; Ivor T. Knight; Steven L. Salzberg (PLoS Comput. Biol., 2007)

Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads. - Steven L. Salzberg; Daniel D. Sommer; Daniela Puiu; Vincent T. Lee (PLoS Comput. Biol., 2008)

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. - Michael C. Schatz; Adam M. Phillippy; Daniel D. Sommer; Arthur L. Delcher; Daniela Puiu; Giuseppe Narzisi; Steven L. Salzberg; Mihai Pop (Briefings Bioinform., 2013)