Topology-based sparsification of graph annotations. - Daniel Danciu; Mikhail Karasikov; Harun Mustafa; André Kahles; Gunnar Rätsch (Bioinform., 2021)

SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing. - Hana Rozhonová; Daniel Danciu; Stefan Stark; Gunnar Rätsch; André Kahles; Kjong-Van Lehmann (Bioinform., 2022)

ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning. - Olga Mineeva; Daniel Danciu; Bernhard Schölkopf; Ruth E. Ley; Gunnar Rätsch; Nicholas D. Youngblut (PLoS Comput. Biol., 2023)