UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. - Daniel E. Newburger; Martha L. Bulyk (Nucleic Acids Res., 2009)

The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome. - Daniel E. Newburger; Georges Natsoulis; Sue Grimes; John M. Bell; Ronald W. Davis; Serafim Batzoglou; Hanlee P. Ji (Nucleic Acids Res., 2012)

Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery. - Raheleh Salari; Syed Shayon Saleh; Dorna Kashef Haghighi; David Khavari; Daniel E. Newburger; Robert B. West; Arend Sidow; Serafim Batzoglou (J. Comput. Biol., 2013)

Read Clouds Uncover Variation in Complex Regions of the Human Genome. - Alex Bishara; Yuling Liu; Dorna Kashef Haghighi; Ziming Weng; Daniel E. Newburger; Robert B. West; Arend Sidow; Serafim Batzoglou (RECOMB, 2015)

Learning to Count Mosquitoes for the Sterile Insect Technique. - Yaniv Ovadia; Yoni Halpern; Dilip Krishnan; Josh Livni; Daniel E. Newburger; Ryan Poplin; Tiantian Zha; D. Sculley (KDD, 2017)