Mega2: data-handling for facilitating genetic linkage and association analyses. - Nandita Mukhopadhyay; Lee Almasy; Mark Schroeder; William P. Mulvihill; Daniel E. Weeks (Bioinform., 2005)

Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis. - Angela P. Presson; Eric M. Sobel; Paivi Pajukanta; Christopher Plaisier; Daniel E. Weeks; Karolina A. Åberg; Jeanette C. Papp (BMC Bioinform., 2008)

Mega2: validated data-reformatting for linkage and association analyses. - Robert V. Baron; Charles Kollar; Nandita Mukhopadhyay; Daniel E. Weeks (Source Code Biol. Medicine, 2014)

dbVOR: a database system for importing pedigree, phenotype and genotype data and exporting selected subsets. - Robert V. Baron; Yvette P. Conley; Michael B. Gorin; Daniel E. Weeks (BMC Bioinform., 2015)

The Mega2R package: R tools for accessing and processing genetic data in common formats. - Robert V. Baron; Justin R. Stickel; Daniel E. Weeks (F1000Research, 2018)

Deep-learning-based prediction of late age-related macular degeneration progression. - Qi Yan 008; Daniel E. Weeks; Hongyi Xin; Anand Swaroop; Emily Y. Chew; Heng Huang; Ying Ding 003; Wei Chen 074 (Nat. Mach. Intell., 2020)

CHIT: an allele-specific method for testing the association between molecular quantitative traits and phenotype-genotype interaction. - Qi Yan 008; Erick Forno; Juan C. Celedón; Wei Chen 074; Daniel E. Weeks (Bioinform., 2021)

dbGaPCheckup: pre-submission checks of dbGaP-formatted subject phenotype files. - Lacey W. Heinsberg; Daniel E. Weeks (BMC Bioinform., 2023)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)