3D adaptive mesh refinement simulations of pellet injection in tokamaks. - Ravi Samtaney; Stephen C. Jardin; Phillip Colella; Daniel F. Martin (Comput. Phys. Commun., 2004)

Adaptive mesh refinement for multiscale nonequilibrium physics. - Daniel F. Martin; Phillip Colella; Marian Anghel; Francis J. Alexander (Comput. Sci. Eng., 2005)

A cell-centered adaptive projection method for the incompressible Navier-Stokes equations in three dimensions. - Daniel F. Martin; Phillip Colella; Daniel T. Graves (J. Comput. Phys., 2008)

Numerical Implementation of Streaming Down the Gradient: Application to Fluid Modeling of Cosmic Rays and Saturated Conduction. - Prateek Sharma; Phillip Colella; Daniel F. Martin (SIAM J. Sci. Comput., 2010)

High-order, finite-volume methods in mapped coordinates. - Phillip Colella; Milo R. Dorr; Jeffrey A. F. Hittinger; Daniel F. Martin (J. Comput. Phys., 2011)

Adaptive mesh, finite volume modeling of marine ice sheets. - Stephen L. Cornford; Daniel F. Martin; Daniel T. Graves; Douglas F. Ranken; Anne M. Le Brocq; Rupert M. Gladstone; Antony J. Payne; Esmond G. Ng; William H. Lipscomb (J. Comput. Phys., 2013)

Parallel In Situ Detection of Connected Components in Adaptive Mesh Refinement Data. - Xiaocheng Zou; Kesheng Wu; David A. Boyuka II; Daniel F. Martin; Surendra Byna; Houjun Tang; Kushal Bansal; Terry J. Ligocki; Hans Johansen; Nagiza F. Samatova (CCGRID, 2015)

Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications. - Wenzhao Zhang; Houjun Tang; Stephen Ranshous; Surendra Byna; Daniel F. Martin; Kesheng Wu; Bin Dong 002; Scott Klasky; Nagiza F. Samatova (IEEE BigData, 2016)

AMRZone: A Runtime AMR Data Sharing Framework for Scientific Applications. - Wenzhao Zhang; Houjun Tang; Steve Harenberg; Surendra Byna; Xiaocheng Zou; Dharshi Devendran; Daniel F. Martin; Kesheng Wu; Bin Dong 002; Scott Klasky; Nagiza F. Samatova (CCGrid, 2016)

In Situ Storage Layout Optimization for AMR Spatio-temporal Read Accesses. - Houjun Tang; Suren Byna; Steve Harenberg; Wenzhao Zhang; Xiaocheng Zou; Daniel F. Martin; Bin Dong 002; Dharshi Devendran; Kesheng Wu; David Trebotich; Scott Klasky; Nagiza F. Samatova (ICPP, 2016)

AMR-aware in situ indexing and scalable querying. - Xiaocheng Zou; David A. Boyuka II; Dhara Desai; Daniel F. Martin; Surendra Byna; Kesheng Wu (SpringSim (HPS), 2016)

Composite matrix construction for structured grid adaptive mesh refinement. - Mark F. Adams; Stephen L. Cornford; Daniel F. Martin; Peter McCorquodale (Comput. Phys. Commun., 2019)

Modelling binary alloy solidification with adaptive mesh refinement. - James R. G. Parkinson; Daniel F. Martin; Andrew J. Wells; Richard F. Katz (J. Comput. Phys. X, 2020)

A survey of software implementations used by application codes in the Exascale Computing Project. - Thomas M. Evans 001; Andrew R. Siegel; Erik W. Draeger; Jack Deslippe; Marianne M. Francois; Timothy C. Germann; William E. Hart; Daniel F. Martin (Int. J. High Perform. Comput. Appl., 2022)

Building a Diverse and Inclusive HPC Community for Mission-Driven Team Science. - Lois Curfman McInnes; Paige C. Kinsley; Mary Ann E. Leung; Daniel F. Martin; Suzanne Parete-Koon; Sreeranjani Jini Ramprakash (Comput. Sci. Eng., 2023)

A high order Cartesian grid, finite volume method for elliptic interface problems. - Will Thacher; Hans Johansen; Daniel F. Martin (J. Comput. Phys., 2023)

A high order cut-cell method for solving the shallow-shelf equations. - Will Thacher; Hans Johansen; Daniel F. Martin (J. Comput. Sci., 2024)

A COGENT case study: Supporting Applications with Chombo. - Daniel F. Martin; Milo R. Dorr; Mikhail A. Dorf; Lee F. Ricketson (CoRR, 2025)