Protein Technologies: Two-Dimensional Gel Electrophoresis and Mass Spectrometry for Proteomic Studies: State-of-the-Art. - Daniel Figeys (Essentials of Genomics and Bioinformatics, 2002)

Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass. - Alexandre P. Blanchard; Graeme S. V. McDowell; Nico Valenzuela; Hongbin Xu; Sarah Gelbard; Martin Bertrand; Gary W. Slater; Daniel Figeys; Stephen Fai; Steffany A. L. Bennett (Bioinform., 2013)

Advancing Lipidomic Bioinformatic Technologies: Visualization and Phospholipid Identification (VaLID) version 3.0. - Graeme S. V. McDowell; Alexandre P. Blanchard; Daniel Figeys; Stephen Fai; Steffany A. L. Bennett (IWBBIO, 2014)

iMetaLab 1.0: a web platform for metaproteomics data analysis. - Bo Liao; Zhibin Ning; Kai Cheng; Xu Zhang; Leyuan Li; Janice Mayne; Daniel Figeys (Bioinform., 2018)

pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies. - Caitlin M. A. Simopoulos; Zhibin Ning; Xu Zhang; Leyuan Li; Krystal Walker; Mathieu Lavallée-Adam; Daniel Figeys (Bioinform., 2020)