Using Fuzzy Patterns for Gene Selection and Data Reduction on Microarray Data. - Fernando Díaz 001; Florentino Fdez-Riverola; Daniel Glez-Peña; Juan M. Corchado (IDEAL, 2006)

Applying GCS Networks to Fuzzy Discretized Microarray Data for Tumour Diagnosis. - Fernando Díaz 001; Florentino Fdez-Riverola; Daniel Glez-Peña; Juan M. Corchado (IDEAL, 2006)

Relaxing Feature Selection in Spam Filtering by Using Case-Based Reasoning Systems. - José Ramón Méndez 001; Florentino Fdez-Riverola; Daniel Glez-Peña; Fernando Díaz 001; Juan M. Corchado (EPIA Workshops, 2007)

A platform for the selection of genes in DNA microarraydata using evolutionary algorithms. - Miguel Rocha 001; Rui Mendes 001; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola (GECCO, 2007)

Assessing Classification Accuracy in the Revision Stage of a CBR Spam Filtering System. - José Ramón Méndez 001; Carlos González; Daniel Glez-Peña; Florentino Fdez-Riverola; Fernando Díaz 001; Juan M. Corchado (ICCBR, 2007)

Analyzing the Performance of Spam Filtering Methods When Dimensionality of Input Vector Changes. - José Ramón Méndez 001; B. Corzo; Daniel Glez-Peña; Florentino Fernández Riverola; Fernando Díaz 001 (MLDM, 2007)

Developing New Services for the Automotive Industry using Matrix. - Silvia Alén; Daniel Glez-Peña; Florentino Fdez-Riverola (WEBIST (1), 2007)

A framework for the development of Biomedical Text Mining software tools. - Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (BIBE, 2008)

Integrating Heterogeneous Data and Applications with Distributed-AIBENCH. - Julia Glez-Dopazo; Daniel Glez-Peña; Florentino Fdez-Riverola (HIS, 2008)

The Impact of Noise in Spam Filtering: A Case Study. - I. Cid; L. R. Janeiro; José Ramón Méndez 001; Daniel Glez-Peña; Florentino Fdez-Riverola (ICDM, 2008)

A Comparative Impact Study of Attribute Selection Techniques on Naïve Bayes Spam Filters. - José Ramón Méndez 001; I. Cid; Daniel Glez-Peña; Miguel Rocha 001; Florentino Fdez-Riverola (ICDM, 2008)

Beds and Bits: The Challenge of Translational Bioinformatics. - Daniel Glez-Peña; Pablo Vicente Carrera; Gonzalo Gómez-López; Carmen M. Redondo Marey (IWPACBB, 2008)

Multiple-Microarray Analysis and Internet Gathering Information with Application for Aiding Medical Diagnosis in Cancer Research. - Daniel Glez-Peña; Manuel Glez Bedia; Fernando Díaz 001; Florentino Fernández Riverola (IWPACBB, 2008)

Applying Text Mining to Search for Protein Patterns. - Pablo Vicente Carrera; Daniel Glez-Peña; Eva Lorenzo Iglesias; Lourdes Borrajo; Reyes Pavón 001; Rosalía Laza; Carmen M. Redondo Marey (IWANN (2), 2009)

Current Efforts to Integrate Biological Pathway Information. - Daniel Glez-Peña; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (IWANN (2), 2009)

An Evolutionary Approach for Sample-Based Clustering on Microarray Data. - Daniel Glez-Peña; Fernando Díaz 001; José Ramón Méndez 001; Juan M. Corchado; Florentino Fdez-Riverola (IWANN (2), 2009)

Classification of MedLine Documents Using MeSH Terms. - Daniel Glez-Peña; Sira López; Reyes Pavón 001; Rosalía Laza; Eva Lorenzo Iglesias; Lourdes Borrajo (IWANN (2), 2009)

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. - Anália Lourenço; Sónia Carneiro; Eugénio C. Ferreira; Rafael Carreira; Luis M. Rocha; Daniel Glez-Peña; José Ramón Méndez 001; Florentino Fdez-Riverola; Fernando Díaz 001; Isabel Rocha; Miguel Rocha 001 (IWANN (2), 2009)

geneSetFinder: A Multiagent Architecture for Gathering Biological Information. - Daniel Glez-Peña; Julia Glez-Dopazo; Reyes Pavón 001; Rosalía Laza; Florentino Fdez-Riverola (PAAMS, 2009)

A Multi-Agent System Approach for Algorithm Parameter Tuning. - Reyes Pavón 001; Daniel Glez-Peña; Rosalía Laza; Fernando Díaz 001; María Victoria Luzón (PAAMS, 2009)

DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data. - Daniel Glez-Peña; Rodrigo Álvarez; Fernando Díaz 001; Florentino Fdez-Riverola (BMC Bioinform., 2009)

geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research. - Daniel Glez-Peña; Fernando Díaz 001; Jesús M. Hernández; Juan M. Corchado; Florentino Fdez-Riverola (BMC Bioinform., 2009)

Managing irrelevant knowledge in CBR models for unsolicited e-mail classification. - José Ramón Méndez 001; Daniel Glez-Peña; Florentino Fdez-Riverola; Fernando Díaz 001; Juan M. Corchado (Expert Syst. Appl., 2009)

@Note: A workbench for Biomedical Text Mining. - Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (J. Biomed. Informatics, 2009)

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. - Daniel Glez-Peña; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Nucleic Acids Res., 2009)

Fuzzy Patterns and GCS Networks to Clustering Gene Expression Data. - Daniel Glez-Peña; Fernando Díaz 001; Florentino Fdez-Riverola; José Ramón Méndez 001; Juan M. Corchado (Fuzzy Systems in Bioinformatics and Computational Biology, 2009)

Incorporating biological knowledge to microarray data classification through genomic data fusion. - Daniel Glez-Peña; Marta Pérez-Fernández; Miguel Reboiro-Jato; Florentino Fdez-Riverola; Marta Pérez; Fernando Díaz 001 (FUSION, 2010)

An Experimental Evaluation of a Novel Stochastic Method for Iterative Class Discovery on Real Microarray Datasets. - Héctor Gómez; Daniel Glez-Peña; Miguel Reboiro-Jato; Reyes Pavón 001; Fernando Díaz 001; Florentino Fdez-Riverola (IWPACBB, 2010)

A Comparative Study of Microarray Data Classification Methods Based on Ensemble Biological Relevant Gene Sets. - Miguel Reboiro-Jato; Daniel Glez-Peña; Juan F. Gálvez; Rosalía Laza; Fernando Díaz 001; Florentino Fdez-Riverola (IWPACBB, 2010)

PathAgent: Multi-agent System for Updated Pathway Information Integration. - Miguel Reboiro-Jato; Daniel Glez-Peña; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Celso Campos; Florentino Fdez-Riverola (PAAMS (Special Sessions and Workshops), 2010)

Multi-agent System for Mass Spectrometry Analysis. - Miguel Reboiro-Jato; Daniel Glez-Peña; Hugo Miguel Santos; Mário S. Diniz; Carlos Lodeiro; José L. Capelo; Florentino Fdez-Riverola (PAAMS (Special Sessions and Workshops), 2010)

Resumen de Tesis: Model for explicit biological knowledge integration in DNA microarray gene expression classification. - Daniel Glez-Peña (Inteligencia Artif., 2010)

AIBench: A rapid application development framework for translational research in biomedicine. - Daniel Glez-Peña; Miguel Reboiro-Jato; Paulo Maia; Miguel Rocha 001; Fernando Díaz 001; Florentino Fdez-Riverola (Comput. Methods Programs Biomed., 2010)

BioDR: Semantic indexing networks for biomedical document retrieval. - Anália Lourenço; Rafael Carreira; Daniel Glez-Peña; José Ramón Méndez 001; Sónia Carneiro; Luis Mateus Rocha; Fernando Díaz 001; Eugénio C. Ferreira; Isabel Rocha; Florentino Fdez-Riverola; Miguel Rocha 001 (Expert Syst. Appl., 2010)

PathJam: a new service for integrating biological pathway information. - Daniel Glez-Peña; Miguel Reboiro-Jato; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (J. Integr. Bioinform., 2010)

ALTER: program-oriented conversion of DNA and protein alignments. - Daniel Glez-Peña; Daniel Gómez-Blanco; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David Posada (Nucleic Acids Res., 2010)

Medical-Miner: Integración de conocimiento textual explícito en técnicas de minería de datos para la creación de herramientas traslacionales en medicina. - Manuel de Buenaga Rodríguez; Florentino Fdez-Riverola; Manuel J. Maña López; Enrique Puertas Sanz; Daniel Glez-Peña; Jacinto Mata (Proces. del Leng. Natural, 2010)

Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments. - Daniel Glez-Peña; Osvaldo Graña; Florentino Fdez-Riverola; David G. Pisano (PACBB, 2011)

An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies. - Daniel Glez-Peña; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David G. Pisano; Gonzalo Gómez-López (PACBB, 2011)

Building Proteomics Applications with the AIBench Application Framework. - Miguel Reboiro-Jato; Daniel Glez-Peña; José Ramón Méndez Reboredo; Hugo Miguel Santos; Ricardo Jorge Carreira; José L. Capelo; Florentino Fdez-Riverola (PACBB, 2011)

Medical-Miner at TREC 2011 Medical Records Track. - Juan Manuel Córdoba; Manuel J. Maña López; Noa P. Cruz Díaz; Jacinto Mata; Fernando Aparicio; Manuel de Buenaga Rodríguez; Daniel Glez-Peña; Florentino Fdez-Riverola (TREC, 2011)

PileLine: a toolbox to handle genome position information in next-generation sequencing studies. - Daniel Glez-Peña; Gonzalo Gómez-López; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David G. Pisano (BMC Bioinform., 2011)

Using inductive learning to assess compound feed production in cooperative poultry farms. - Miguel Reboiro-Jato; Julia Glez-Dopazo; D. Glez; Rosalía Laza; Juan F. Gálvez; Reyes Pavón 001; Daniel Glez-Peña; Florentino Fdez-Riverola (Expert Syst. Appl., 2011)

Rapid development of proteomic applications with the AIBench framework. - Hugo López-Fernández; Miguel Reboiro-Jato; Daniel Glez-Peña; José Ramón Méndez Reboredo; Hugo Miguel Santos; Ricardo Jorge Carreira; José Luis Capelo-Martínez; Florentino Fdez-Riverola (J. Integr. Bioinform., 2011)

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. - Hugo López-Fernández; Daniel Glez-Peña; Miguel Reboiro-Jato; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Nucleic Acids Res., 2011)

Biological Knowledge Integration in DNA Microarray Gene Expression Classification Based on Rough Set Theory. - Diego Calvo-Dmgz; Juan F. Gálvez; Daniel Glez-Peña; Florentino Fdez-Riverola (PACBB, 2012)

Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. - Hugo López-Fernández; Daniel Glez-Peña; Miguel Reboiro-Jato; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (PACBB, 2012)

A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets. - Miguel Reboiro-Jato; Daniel Glez-Peña; Fernando Díaz 001; Florentino Fdez-Riverola (Int. J. Data Min. Bioinform., 2012)

Using Variable Precision Rough Set for Selection and Classification of Biological Knowledge Integrated in DNA Gene Expression. - Diego Calvo-Dmgz; Juan F. Gálvez; Daniel Glez-Peña; Silvana Gómez-Meire; Florentino Fdez-Riverola (J. Integr. Bioinform., 2012)

A JAVA application framework for scientific software development. - Florentino Fdez-Riverola; Daniel Glez-Peña; Hugo López-Fernández; Miguel Reboiro-Jato; José Ramón Méndez 001 (Softw. Pract. Exp., 2012)

A Workflow for the Application of Biclustering to Mass Spectrometry Data. - Hugo López-Fernández; Miguel Reboiro-Jato; Sara C. Madeira; Rubén López-Cortés; J. D. Nunes-Miranda; Hugo Miguel Santos; Florentino Fdez-Riverola; Daniel Glez-Peña (PACBB, 2013)

BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments. - Hugo López-Fernández; Miguel Reboiro-Jato; Daniel Glez-Peña; Fernando Aparicio; Diego Gachet; Manuel Buenaga; Florentino Fdez-Riverola (Comput. Methods Programs Biomed., 2013)

genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data. - Miguel Reboiro-Jato; Rosalía Laza; Hugo López-Fernández; Daniel Glez-Peña; Fernando Díaz 001; Florentino Fdez-Riverola (Expert Syst. Appl., 2013)

Marky: A Lightweight Web Tracking Tool for Document Annotation. - Martín Pérez-Pérez; Daniel Glez-Peña; Florentino Fdez-Riverola; Anália Lourenço (PACBB, 2014)

BEW: Bioinformatics Workbench for Analysis of Biofilms Experimental Data. - Gael Pérez Rodríguez; Daniel Glez-Peña; Nuno F. Azevedo; Maria Olívia Pereira; Florentino Fdez-Riverola; Anália Lourenço (PACBB, 2014)

A novel ensemble of classifiers that use biological relevant gene sets for microarray classification. - Miguel Reboiro-Jato; Fernando Díaz 001; Daniel Glez-Peña; Florentino Fdez-Riverola (Appl. Soft Comput., 2014)

Web scraping technologies in an API world. - Daniel Glez-Peña; Anália Lourenço; Hugo López-Fernández; Miguel Reboiro-Jato; Florentino Fdez-Riverola (Briefings Bioinform., 2014)

A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification. - Hugo López-Fernández; Miguel Reboiro-Jato; Daniel Glez-Peña; Florentino Fernández Riverola (Int. J. Data Min. Bioinform., 2014)

The Application of Available Technologies for the Utilization and Commercialization of Resources and Benefits Obtained from Solar Energy. - Daniel González-Peña; Carmen de Pablos Heredero; Antón Rafael García Martinez (CENTERIS/ProjMAN/HCist, 2015)

A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis. - Osvaldo Graña; Miriam Rubio-Camarillo; Florentino Fdez-Riverola; David G. Pisano; Daniel Glez-Peña (PACBB, 2015)

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets. - Eduardo Andrés León; Daniel González-Peña; Gonzalo Gómez-López; David G. Pisano (Database J. Biol. Databases Curation, 2015)

Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery. - Hugo López-Fernández; Hugo Miguel Santos; José L. Capelo; Florentino Fdez-Riverola; Daniel Glez-Peña; Miguel Reboiro-Jato (BMC Bioinform., 2015)

Marky: A tool supporting annotation consistency in multi-user and iterative document annotation projects. - Martín Pérez-Pérez; Daniel Glez-Peña; Florentino Fdez-Riverola; Anália Lourenço (Comput. Methods Programs Biomed., 2015)

Enabling systematic, harmonised and large-scale biofilms data computation: The Biofilms Experiment Workbench. - Gael Pérez Rodríguez; Daniel Glez-Peña; Nuno F. Azevedo; Maria Olívia Pereira; Florentino Fdez-Riverola; Anália Lourenço (Comput. Methods Programs Biomed., 2015)

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data. - Miriam Rubio-Camarillo; Hugo López-Fernández; Gonzalo Gómez-López; Angel Carro; José María Fernández 001; Florentino Fdez-Riverola; Daniel Glez-Peña; David G. Pisano (PACBB, 2016)

A case-based reasoning system for aiding detection and classification of nosocomial infections. - H. J. Gómez-Vallejo; B. Uriel-Latorre; M. Sande-Meijide; B. Villamarín-Bello; Reyes Pavón 001; Florentino Fernández Riverola; Daniel Glez-Peña (Decis. Support Syst., 2016)

LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data. - Hugo López-Fernández; Gustavo de S. Pessôa; Marco A. Z. Arruda; José Luis Capelo-Martínez; Florentino Fdez-Riverola; Daniel Glez-Peña; Miguel Reboiro-Jato (J. Cheminformatics, 2016)

S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data. - Hugo López-Fernández; Jose E. Araújo; Daniel Glez-Peña; Miguel Reboiro-Jato; Florentino Fdez-Riverola; José Luis Capelo-Martínez (PACBB, 2017)

RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data. - Miriam Rubio-Camarillo; Hugo López-Fernández; Gonzalo Gómez-López; Angel Carro; José María Fernández 001; Coral Fustero Torre; Florentino Fdez-Riverola; Daniel Glez-Peña (Comput. Methods Programs Biomed., 2017)

Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data. - Osvaldo Graña; Hugo López-Fernández; Florentino Fdez-Riverola; David G. Pisano; Daniel Glez-Peña (Bioinform., 2018)

S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data. - Hugo López-Fernández; Jose E. Araújo; Susana Jorge 001; Daniel Glez-Peña; Miguel Reboiro-Jato; Hugo Miguel Santos; Florentino Fdez-Riverola; José L. Capelo (Comput. Methods Programs Biomed., 2018)

Perceptions of the use of intelligent information access systems in university level active learning activities among teachers of biomedical subjects. - Fernando Aparicio; Maria de la Luz Morales-Botello; Margarita Rubio; Asunción Hernando; Rafael Muñoz 004; Hugo López-Fernández; Daniel Glez-Peña; Florentino Fdez-Riverola; Manuel de la Villa; Manuel J. Maña López; Diego Gachet; Manuel de Buenaga Rodríguez (Int. J. Medical Informatics, 2018)

Deep Learning Techniques for Real Time Computer-Aided Diagnosis in Colorectal Cancer. - Alba Nogueira-Rodríguez; Hugo López-Fernández; Daniel Glez-Peña (DCAI (Special Sessions), 2019)

Proposal of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine. - Osvaldo Graña-Castro; Hugo López-Fernández; Florentino Fdez-Riverola; Fátima Al-Shahrour; Daniel Glez-Peña (PACBB, 2019)

Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines. - Alba Nogueira-Rodríguez; Hugo López-Fernández; Osvaldo Graña-Castro; Miguel Reboiro-Jato; Daniel Glez-Peña (PACBB, 2020)

DREIMT: a drug repositioning database and prioritization tool for immunomodulation. - Kevin Troulé; Hugo López-Fernández; Santiago García-Martín; Miguel Reboiro-Jato; Carlos Carretero-Puche; Jordi Martorell-Marugan; Guillermo Martín-Serrano; Pedro Carmona-Saez; Daniel Glez-Peña; Fátima Al-Shahrour; Gonzalo Gómez-López (Bioinform., 2021)

Deep Neural Networks approaches for detecting and classifying colorectal polyps. - Alba Nogueira-Rodríguez; Rubén Domínguez-Carbajales; Hugo López-Fernández; Águeda Iglesias; Joaquín Cubiella; Florentino Fdez-Riverola; Miguel Reboiro-Jato; Daniel Glez-Peña (Neurocomputing, 2021)

Compi: a framework for portable and reproducible pipelines. - Hugo López-Fernández; Osvaldo Graña-Castro; Alba Nogueira-Rodríguez; Miguel Reboiro-Jato; Daniel Glez-Peña (PeerJ Comput. Sci., 2021)

Real-time polyp detection model using convolutional neural networks. - Alba Nogueira-Rodríguez; Rubén Domínguez-Carbajales; Fernando Campos-Tato; Jesús Herrero; Manuel Puga; David Remedios; Laura Rivas; Eloy Sánchez; Águeda Iglesias; Joaquín Cubiella; Florentino Fdez-Riverola; Hugo López-Fernández; et al. (Neural Comput. Appl., 2022)

PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data. - María José Jiménez-Santos; Alba Nogueira-Rodríguez; Elena Piñeiro-Yáñez; Hugo López-Fernández; Santiago García-Martín; Paula Gómez-Plana; Miguel Reboiro-Jato; Gonzalo Gómez-López; Daniel Glez-Peña; Fátima Al-Shahrour (Nucleic Acids Res., 2023)

Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information. - Daniel Glez-Peña; Hugo López-Fernández; Pedro Duque; Cristina P. Vieira; Jorge Vieira (J. Integr. Bioinform., 2024)