Microprocessor-based robotic system for control of fluid connections in the cardiac catheterization laboratory. - Lloyd A. Marks; Kenneth L. Short; Daniel Hoffmann; Albert Lew (IEEE Trans. Biomed. Eng., 1988)

Identifying drug resistance-associated patterns in HIV genotypes. - Niko Beerenwinkel; Barbara Schmidt; Hauke Walter; Rolf Kaiser; Thomas Lengauer; Daniel Hoffmann; Klaus Korn; Joachim Selbig (German Conference on Bioinformatics, 2001)

Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. - Niko Beerenwinkel; Barbara Schmidt; Hauke Walter; Rolf Kaiser; Thomas Lengauer; Daniel Hoffmann; Klaus Korn; Joachim Selbig (IEEE Intell. Syst., 2001)

Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. - Niko Beerenwinkel; Barbara Schmidt; Hauke Walter; Rolf Kaiser; Thomas Lengauer; Daniel Hoffmann; Klaus Korn; Joachim Selbig (Proc. Natl. Acad. Sci. USA, 2002)

Methods for optimizing antiviral combination therapies. - Niko Beerenwinkel; Thomas Lengauer; Martin Däumer; Rolf Kaiser; Hauke Walter; Klaus Korn; Daniel Hoffmann; Joachim Selbig (ISMB (Supplement of Bioinformatics), 2003)

Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. - Niko Beerenwinkel; Martin Däumer; Mark Oette; Klaus Korn; Daniel Hoffmann; Rolf Kaiser; Thomas Lengauer; Joachim Selbig; Hauke Walter (Nucleic Acids Res., 2003)

A multi-objective evolutionary approach to peptide structure redesign and stabilization. - Tim Hohm; Daniel Hoffmann (GECCO, 2005)

Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. - Tobias Sing; Valentina Svicher; Niko Beerenwinkel; Francesca Ceccherini-Silberstein; Martin Däumer; Rolf Kaiser; Hauke Walter; Klaus Korn; Daniel Hoffmann; Mark Oette; Jürgen K. Rockstroh; Gerd Fätkenheuer; et al. (PKDD, 2005)

Mtreemix: a software package for learning and using mixture models of mutagenetic trees. - Niko Beerenwinkel; Jörg Rahnenführer; Rolf Kaiser; Daniel Hoffmann; Joachim Selbig; Thomas Lengauer (Bioinform., 2005)

Computational methods for the design of effective therapies against drug resistant HIV strains. - Niko Beerenwinkel; Tobias Sing; Thomas Lengauer; Jörg Rahnenführer; Kirsten Roomp; Igor Savenkov; Roman Fischer; Daniel Hoffmann; Joachim Selbig; Klaus Korn; Hauke Walter; Thomas Berg; et al. (Bioinform., 2005)

Learning Multiple Evolutionary Pathways from Cross-Sectional Data. - Niko Beerenwinkel; Jörg Rahnenführer; Martin Däumer; Daniel Hoffmann; Rolf Kaiser; Joachim Selbig; Thomas Lengauer (J. Comput. Biol., 2005)

Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. - Kirsten Roomp; Niko Beerenwinkel; Tobias Sing; Eugen Schülter; Joachim Büch; Saleta Sierra-Aragon; Martin Däumer; Daniel Hoffmann; Rolf Kaiser; Thomas Lengauer; Joachim Selbig (DILS, 2006)

A Multiobjective Evolutionary Method for the Design of Peptidic Mimotopes. - Tim Hohm; Philipp Limbourg; Daniel Hoffmann (J. Comput. Biol., 2006)

Evolutionary Pareto-optimization of stably folding peptides. - Wolfram Gronwald; Tim Hohm; Daniel Hoffmann (BMC Bioinform., 2008)

A Novel Algorithm for Macromolecular Epitope Matching. - Stanislav Jakuschev; Daniel Hoffmann (Algorithms, 2009)

Spatial contiguity and implicit learning in hypertext. - Seungoh Paek; Daniel Hoffmann; Antonios Saravanos (HT, 2010)

Predicting Bevirimat resistance of HIV-1 from genotype. - Dominik Heider; Jens Verheyen; Daniel Hoffmann (BMC Bioinform., 2010)

Prediction of Co-Receptor Usage of HIV-1 from Genotype. - Jan Nikolaj Dybowski; Dominik Heider; Daniel Hoffmann (PLoS Comput. Biol., 2010)

Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers. - Jan Nikolaj Dybowski; Mona Riemenschneider; Sascha Hauke; Martin Pyka; Jens Verheyen; Daniel Hoffmann; Dominik Heider (BioData Min., 2011)

Interpol: An R package for preprocessing of protein sequences. - Dominik Heider; Daniel Hoffmann (BioData Min., 2011)

Unsupervised Dimension Reduction Methods for Protein Sequence Classification. - Dominik Heider; Christoph Bartenhagen; Jan Nikolaj Dybowski; Sascha Hauke; Martin Pyka; Daniel Hoffmann (GfKl, 2012)

The Normal-Mode Entropy in the MM/GBSA Method: Effect of System Truncation, Buffer Region, and Dielectric Constant. - Samuel Genheden; Oliver Kuhn; Paulius Mikulskis; Daniel Hoffmann; Ulf Ryde (J. Chem. Inf. Model., 2012)

GravitySpace: tracking users and their poses in a smart room using a pressure-sensing floor. - Alan Bränzel; Christian Holz 001; Daniel Hoffmann; Dominik Schmidt; Marius Knaust; Patrick Lühne; René Meusel; Stephan Richter 003; Patrick Baudisch (CHI Extended Abstracts, 2013)

A simple structure-based model for the prediction of HIV-1 co-receptor tropism. - Dominik Heider; Jan Dybowski; Christoph Wilms; Daniel Hoffmann (BioData Min., 2014)

Signaling Domain of Sonic Hedgehog as Cannibalistic Calcium-Regulated Zinc-Peptidase. - Rocio Rebollido-Rios; Shyam Bandari; Christoph Wilms; Stanislav Jakuschev; Andrea Vortkamp; Kay Grobe; Daniel Hoffmann (PLoS Comput. Biol., 2014)

Proprioceptive Interaction. - Pedro Lopes 001; Alexandra Ion; Willi Müller; Daniel Hoffmann; Patrik Jonell; Patrick Baudisch (CHI Extended Abstracts, 2015)

Using A/B testing in MOOC environments. - Jan Renz; Daniel Hoffmann; Thomas Staubitz; Christoph Meinel (LAK, 2016)

Quantitative Comparison of Abundance Structures of Generalized Communities: From B-Cell Receptor Repertoires to Microbiomes. - Mohammadkarim Saeedghalati; Farnoush Farahpour; Bettina Budeus; Anja Lange; Astrid M. Westendorf; Marc Seifert; Ralf Küppers; Daniel Hoffmann (PLoS Comput. Biol., 2017)

Locating Large, Flexible Ligands on Proteins. - Jean-Noël Grad; Alba Gigante; Christoph Wilms; Jan Nikolaj Dybowski; Ludwig Ohl; Christian Ottmann; Carsten Schmuck; Daniel Hoffmann (J. Chem. Inf. Model., 2018)

IgGeneUsage: differential gene usage in immune repertoires. - Simo Kitanovski; Daniel Hoffmann (Bioinform., 2020)

A Self-Adaptive and Self-Sufficient Energy Harvesting System. - Mario Mösch; Gerhard Fischerauer; Daniel Hoffmann (Sensors, 2020)

Classifier uncertainty: evidence, potential impact, and probabilistic treatment. - Niklas Tötsch; Daniel Hoffmann (PeerJ Comput. Sci., 2021)

HAMdetector: a Bayesian regression model that integrates information to detect HLA-associated mutations. - Daniel Habermann; Hadi Kharimzadeh; Andreas Walker; Yang Li; Rongge Yang; Rolf Kaiser; Zabrina L. Brumme; Jörg Timm; Michael Roggendorf; Daniel Hoffmann (Bioinform., 2022)

scBubbletree: computational approach for visualization of single cell RNA-seq data. - Simo Kitanovski; Yingying Cao; Dimitris Ttoouli; Farnoush Farahpour; Jun Wang; Daniel Hoffmann (BMC Bioinform., 2024)