Analysis of sponge zones for computational fluid mechanics. - Daniel J. Bodony (J. Comput. Phys., 2006)

A Toolkit for Parallel Overset Grid Assembly Targeting Large-Scale Moving Body Aerodynamic Simulations. - George Zagaris; Michael T. Campbell; Daniel J. Bodony; Eric Shaffer; Mark D. Brandyberry (IMR, 2010)

Accuracy of the Simultaneous-Approximation-Term Boundary Condition for Time-Dependent Problems. - Daniel J. Bodony (J. Sci. Comput., 2010)

Energy stable numerical methods for hyperbolic partial differential equations using overlapping domain decomposition. - Adam Reichert; Michael T. Heath; Daniel J. Bodony (J. Comput. Phys., 2012)

A practical discrete-adjoint method for high-fidelity compressible turbulence simulations. - Ramanathan Vishnampet; Daniel J. Bodony; Jonathan B. Freund (J. Comput. Phys., 2015)

Improving the memory access locality of hybrid MPI applications. - Matthias Diener; Sam White; Laxmikant V. Kalé; Michael T. Campbell; Daniel J. Bodony; Jonathan B. Freund (EuroMPI/USA, 2017)

Low-Rank Dynamic Mode Decomposition using Riemannian Manifold Optimization. - Palash Sashittal; Daniel J. Bodony (CDC, 2018)

Accelerating Scientific Applications on Heterogeneous Systems with HybridOMP. - Matthias Diener; Daniel J. Bodony; Laxmikant V. Kalé (VECPAR, 2018)

Time-stable overset grid method for hyperbolic problems using summation-by-parts operators. - Nek Sharan; Carlos Pantano; Daniel J. Bodony (J. Comput. Phys., 2018)

Multi-rate time integration on overset meshes. - Cory Mikida; Andreas Klöckner; Daniel J. Bodony (J. Comput. Phys., 2019)

Heterogeneous computing with OpenMP and Hydra. - Matthias Diener; Laxmikant V. Kalé; Daniel J. Bodony (Concurr. Comput. Pract. Exp., 2020)

Study of human phonation in a full body domain. - Shakti Saurabh; Daniel J. Bodony (CoRR, 2020)

Boundary-consistent B-spline filtering schemes and application to high-fidelity simulations of turbulence. - Yong Yi Bay; Daniel J. Bodony; Jonathan B. Freund (J. Comput. Phys., 2020)

Improved eigenvectors for Pulliam-Chaussee diagonalized approximate-factorization algorithm. - Thomas H. Pulliam; Dennis C. Jespersen; Daniel J. Bodony; Shreyas Bidadi (J. Comput. Phys., 2020)

Jump Relations of Certain Hypersingular Stokes Kernels on Regular Surfaces. - Alexandru Fikl; Daniel J. Bodony (SIAM J. Appl. Math., 2020)

An adjoint method for control of liquid-gas flows using a sharp interface model. - Lam Vu; Alexandru Fikl; Daniel J. Bodony; Olivier Desjardins (J. Comput. Phys., 2023)

Adjoint-based control of three dimensional Stokes droplets. - Alexandru Fikl; Daniel J. Bodony (J. Comput. Phys., 2023)

Data-Driven Model Reduction via Non-intrusive Optimization of Projection Operators and Reduced-Order Dynamics. - Alberto Padovan; Blaine Vollmer; Daniel J. Bodony (SIAM J. Appl. Dyn. Syst., 2024)

Petrov-Galerkin model reduction for thermochemical nonequilibrium gas mixtures. - Ivan Zanardi; Alberto Padovan; Daniel J. Bodony; Marco Panesi (J. Comput. Phys., 2025)

Resolvent4py: A parallel Python package for analysis, model reduction and control of large-scale linear systems. - Alberto Padovan; Vishal Anantharaman; Clarence W. Rowley; Blaine Vollmer; Tim Colonius; Daniel J. Bodony (SoftwareX, 2025)